Pairwise Alignments

Query, 369 a.a., tRNA (uridine(54)-C5)-methyltransferase TrmA from Vibrio cholerae E7946 ATCC 55056

Subject, 433 a.a., 23S rRNA (uracil-5-)-methyltransferase (NCBI) from Escherichia coli BW25113

 Score = 84.3 bits (207), Expect = 6e-21
 Identities = 82/302 (27%), Positives = 136/302 (45%), Gaps = 33/302 (10%)

Query: 74  VDQFPAASRLINDLMPLLMDAMKGSPILRHKLFQVDFLSTLSGEILVSLLYHRQLSEEWI 133
           V Q P  +  +  L+P +   +     +RH L  V+ +   SG +++ L +   LS    
Sbjct: 159 VKQCPILAPQLEALLPKVRACLGSLQAMRH-LGHVELVQATSGTLMI-LRHTAPLSS--- 213

Query: 134 TAAQALKQRLNDEGFNLNLIGRARKMKVVLDRD--YVVENLQVNGQPYVYKQVENSFTQP 191
              + L++  + EG +L L   +  ++ V      Y    L++   P  + QV     Q 
Sbjct: 214 ADREKLERFSHSEGLDLYLAPDSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQ- 272

Query: 192 NAKVAEKMLEWAVDCTQESKGDLLELYCGNGNFSLALAQNFERVLATELAKPSVEAAQFN 251
             K+  + LEW +D   E +  +L+L+CG GNF+L LA     V+  E     VE  Q N
Sbjct: 273 --KMVARALEW-LDVQPEDR--VLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQN 327

Query: 252 IAANQIGNVQIIRMSAEE-FTQAMEGKREFNRLKDAGVDLQSYRCNTIFVDPPRSGMDID 310
              N + NV     + EE  T+    K  F++               + +DP R+G    
Sbjct: 328 ARLNGLQNVTFYHENLEEDVTKQPWAKNGFDK---------------VLLDPARAGA-AG 371

Query: 311 TCKMVQGYE--RILYISCNPETLQENLQVLGET-HQVVRFALFDQFPYTHHMEAGVMLER 367
             + +   E  RI+Y+SCNP TL  + + L +  + + R A+ D FP+T H+E+ V+  R
Sbjct: 372 VMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSR 431

Query: 368 KK 369
            K
Sbjct: 432 VK 433