Pairwise Alignments

Query, 369 a.a., tRNA (uridine(54)-C5)-methyltransferase TrmA from Vibrio cholerae E7946 ATCC 55056

Subject, 445 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Erwinia tracheiphila SCR3

 Score = 87.0 bits (214), Expect = 9e-22
 Identities = 89/340 (26%), Positives = 152/340 (44%), Gaps = 46/340 (13%)

Query: 44  YRMRAEFRIWHEGDDMYYIM-FNQ--ETREKYRVDQFPAASRLINDLMPLLMDAMKGSPI 100
           YR RA   ++ +       M F Q   + E   V Q P     +N L+P L   +    +
Sbjct: 133 YRRRARLSLYFDKRSQTVQMGFRQVASSGELVTVMQCPVLKPELNALIPHLHQLLNSLQV 192

Query: 101 LRHKLFQVDFLSTLSGEILVSLLYHRQLSEEWITAAQALKQRLNDEGFNLNLIGRARKMK 160
            R +L  V+ +   +G +LV  L H          ++A K++L     N ++      + 
Sbjct: 193 AR-RLGHVELVLADNGPLLV--LRHLD------ALSRADKEKLEQFSHNNHVA-----LF 238

Query: 161 VVLDRDYVVENLQVNGQPYVYKQVE-------NSFTQPNAKVAEKMLEWAVDCTQESKGD 213
           +  D D +   LQVNG+   Y+  +         F Q N ++ EKM+  A+        D
Sbjct: 239 LAPDSDAL---LQVNGELPFYRINDLTLTFSPRDFIQVNGELNEKMVNQALVWLDIQPED 295

Query: 214 -LLELYCGNGNFSLALAQNFERVLATELAKPSVEAAQFNIAANQIGNVQIIRMSA-EEFT 271
            LL+L+CG GNF+L   +  + V   E     V  A  N   N + NV   + +  E+  
Sbjct: 296 WLLDLFCGMGNFTLPAGKQVKNVTGVEGVATLVGQAVRNAEKNNLNNVDFFQHNLDEDVV 355

Query: 272 QAMEGKREFNRLKDAGVDLQSYRCNTIFVDPPRSGMDIDTCKMVQ-GYERILYISCNPET 330
           +     + FN+               + +DPPR+G       +++   ++++Y+SCNP T
Sbjct: 356 KQPWAAKGFNK---------------VLLDPPRAGAAAGMSHIIKLAPQKVVYVSCNPTT 400

Query: 331 LQENLQ-VLGETHQVVRFALFDQFPYTHHMEAGVMLERKK 369
           L  + Q +L   +++ R +LFD FP+T H+E+ V+  RK+
Sbjct: 401 LTRDSQTLLASGYELERVSLFDMFPHTGHVESMVLFSRKQ 440