Pairwise Alignments

Query, 369 a.a., tRNA (uridine(54)-C5)-methyltransferase TrmA from Vibrio cholerae E7946 ATCC 55056

Subject, 444 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Dickeya dianthicola ME23

 Score = 67.0 bits (162), Expect = 9e-16
 Identities = 53/180 (29%), Positives = 83/180 (46%), Gaps = 23/180 (12%)

Query: 188 FTQPNAKVAEKMLEWAVDCTQESKGD-LLELYCGNGNFSLALAQNFERVLATELAKPSVE 246
           F Q N  + ++M+E A+        D +L+L+CG GNF+L LA     V+  E     V+
Sbjct: 269 FIQVNDGINQRMVEQALTWLDPQPQDRVLDLFCGMGNFTLPLAVRAGSVVGVEGVAALVD 328

Query: 247 AAQFNIAANQIGNVQIIRMSAEEFTQAMEGKREFNRLKDAGVDLQSYRC---NTIFVDPP 303
             + N   N +  V       E                 A V LQ +     + I +DP 
Sbjct: 329 KGRENARRNGLTQVTFYHHDLE-----------------ADVTLQPWAAMGFDKILLDPA 371

Query: 304 RSGMDIDTCKMVQ-GYERILYISCNPETLQENLQVL-GETHQVVRFALFDQFPYTHHMEA 361
           R+G      ++V+    R++YISCNP TL  +  VL    +++ R A+ D FP+T H+E+
Sbjct: 372 RAGAPGVMPQIVKLAPRRVVYISCNPTTLARDSNVLMAAGYRLARLAMLDMFPHTGHLES 431