Pairwise Alignments

Query, 369 a.a., tRNA (uridine(54)-C5)-methyltransferase TrmA from Vibrio cholerae E7946 ATCC 55056

Subject, 471 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Cellulophaga baltica 18

 Score = 80.5 bits (197), Expect = 9e-20
 Identities = 82/320 (25%), Positives = 142/320 (44%), Gaps = 47/320 (14%)

Query: 70  EKYRVDQFPA-ASRLINDLMPLLMDAMKGSPILRHKLFQVDFLSTLS-GEILVS------ 121
           EK  + + P+ A RL      L  D    +P  +H L +   + T S GEI+V       
Sbjct: 178 EKCHLQEDPSNAIRLETKDFALKNDMSFFNPRNQHGLLRTMMIRTTSTGEIMVLVQFFEN 237

Query: 122 -------LLYHRQLSEEWITAA-QALKQRLNDEGFNLNLIGRARKMKVVLDRDYVVENLQ 173
                  LL H QL    ITA    +  + ND  ++  +I  A        RD++ E ++
Sbjct: 238 DKTKRELLLNHLQLKFPEITALLYVVNAKQNDTIYDQEIICFA-------GRDHIFEEME 290

Query: 174 VNGQPYVYKQVENSFTQPNAKVAEKMLEWAVDCTQESKGDLL-ELYCGNGNFSLALAQNF 232
                  +K    SF Q N+  A ++ +   D    +  +L+ +LY G G  +  +A+  
Sbjct: 291 ----GLKFKINAKSFYQTNSDQAFELYKITRDFAGLTGNELVYDLYTGTGTIAQFVAKKA 346

Query: 233 ERVLATELAKPSVEAAQFNIAANQIGNVQIIRMSAEEFTQAMEGKREFNR--LKDAGVDL 290
           ++V+  E    ++E A+ N   N+I N             A + K  FN   +++ G   
Sbjct: 347 KKVVGIEAVPEAIEDAKANAVYNEIENTSFF---------AGDMKNIFNEEFIRENGTP- 396

Query: 291 QSYRCNTIFVDPPRSGMDIDTCKMVQGY--ERILYISCNPETLQENLQVLGETHQVVRFA 348
                + I  DPPR GM  D    +     ++++Y+SCN  T   +L+++ + +++ +  
Sbjct: 397 -----DIIITDPPRDGMHKDVVAQILAISPQKVVYVSCNSATQARDLELMKDDYKITKTQ 451

Query: 349 LFDQFPYTHHMEAGVMLERK 368
             D FP THH+E  V+LE++
Sbjct: 452 AVDMFPQTHHVENVVLLEKR 471