Pairwise Alignments
Query, 369 a.a., tRNA (uridine(54)-C5)-methyltransferase TrmA from Vibrio cholerae E7946 ATCC 55056
Subject, 433 a.a., 23S rRNA m(5)U1939 methyltransferase, SAM-dependent from Escherichia coli BL21
Score = 84.0 bits (206), Expect = 7e-21 Identities = 82/303 (27%), Positives = 135/303 (44%), Gaps = 35/303 (11%) Query: 74 VDQFPAASRLINDLMPLLMDAMKGSPILRHKLFQVDFLSTLSGEILVSLLYHRQLSEEWI 133 V Q P + + L+P + + +RH L V+ + SG +++ L + LS Sbjct: 159 VKQCPILAPQLEALLPKVRACLGSLQAMRH-LGHVELVQATSGTLMI-LRHTAPLSS--- 213 Query: 134 TAAQALKQRLNDEGFNLNLIGRARKMKVVLDRD--YVVENLQVNGQPYVYKQVENSFTQP 191 + L++ + EG +L L + ++ V Y L++ P F Q Sbjct: 214 ADREKLERFSHSEGLDLYLAPDSEILETVSGEMPWYDSNGLRLTFSP-------RDFIQV 266 Query: 192 NAKVAEKMLEWAVDCTQESKGD-LLELYCGNGNFSLALAQNFERVLATELAKPSVEAAQF 250 NA V +KM+ A++ D +L+L+CG GNF+L LA V+ E VE Q Sbjct: 267 NAGVNQKMVARALELLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQ 326 Query: 251 NIAANQIGNVQIIRMSAEE-FTQAMEGKREFNRLKDAGVDLQSYRCNTIFVDPPRSGMDI 309 N N + NV + EE T+ K F++ + +DP R+G Sbjct: 327 NARLNGLQNVTFYHENLEEDVTKQPWAKNGFDK---------------VLLDPARAGA-A 370 Query: 310 DTCKMVQGYE--RILYISCNPETLQENLQVLGET-HQVVRFALFDQFPYTHHMEAGVMLE 366 + + E RI+Y+SCNP TL + + L + + + R A+ D FP+T H+E+ V+ Sbjct: 371 GVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFS 430 Query: 367 RKK 369 R K Sbjct: 431 RVK 433