Pairwise Alignments

Query, 369 a.a., tRNA (uridine(54)-C5)-methyltransferase TrmA from Vibrio cholerae E7946 ATCC 55056

Subject, 433 a.a., 23S rRNA m(5)U1939 methyltransferase, SAM-dependent from Escherichia coli BL21

 Score = 84.0 bits (206), Expect = 7e-21
 Identities = 82/303 (27%), Positives = 135/303 (44%), Gaps = 35/303 (11%)

Query: 74  VDQFPAASRLINDLMPLLMDAMKGSPILRHKLFQVDFLSTLSGEILVSLLYHRQLSEEWI 133
           V Q P  +  +  L+P +   +     +RH L  V+ +   SG +++ L +   LS    
Sbjct: 159 VKQCPILAPQLEALLPKVRACLGSLQAMRH-LGHVELVQATSGTLMI-LRHTAPLSS--- 213

Query: 134 TAAQALKQRLNDEGFNLNLIGRARKMKVVLDRD--YVVENLQVNGQPYVYKQVENSFTQP 191
              + L++  + EG +L L   +  ++ V      Y    L++   P         F Q 
Sbjct: 214 ADREKLERFSHSEGLDLYLAPDSEILETVSGEMPWYDSNGLRLTFSP-------RDFIQV 266

Query: 192 NAKVAEKMLEWAVDCTQESKGD-LLELYCGNGNFSLALAQNFERVLATELAKPSVEAAQF 250
           NA V +KM+  A++       D +L+L+CG GNF+L LA     V+  E     VE  Q 
Sbjct: 267 NAGVNQKMVARALELLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQ 326

Query: 251 NIAANQIGNVQIIRMSAEE-FTQAMEGKREFNRLKDAGVDLQSYRCNTIFVDPPRSGMDI 309
           N   N + NV     + EE  T+    K  F++               + +DP R+G   
Sbjct: 327 NARLNGLQNVTFYHENLEEDVTKQPWAKNGFDK---------------VLLDPARAGA-A 370

Query: 310 DTCKMVQGYE--RILYISCNPETLQENLQVLGET-HQVVRFALFDQFPYTHHMEAGVMLE 366
              + +   E  RI+Y+SCNP TL  + + L +  + + R A+ D FP+T H+E+ V+  
Sbjct: 371 GVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFS 430

Query: 367 RKK 369
           R K
Sbjct: 431 RVK 433