Pairwise Alignments

Query, 369 a.a., tRNA (uridine(54)-C5)-methyltransferase TrmA from Vibrio cholerae E7946 ATCC 55056

Subject, 375 a.a., 23S rRNA m(5)U747 methyltransferase, SAM-dependent from Escherichia coli BL21

 Score = 58.2 bits (139), Expect = 4e-13
 Identities = 46/185 (24%), Positives = 83/185 (44%), Gaps = 21/185 (11%)

Query: 187 SFTQPNAKVAEKMLEWAVDCTQESK-GDLLELYCGNGNFSLALAQNFERVLATELAKPSV 245
           SF Q N  VA ++   A D  ++     + +L+CG G F L  A    ++   E+A  ++
Sbjct: 209 SFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIAPEAI 268

Query: 246 EAAQFNIAANQIGNVQIIRMSAEEFTQAMEGKREFNRLKDAGVDLQSYRCNTIFVDPPRS 305
             A+ + A   +  +Q   + + +F  A     E                  + V+PPR 
Sbjct: 269 ACAKQSAAELGLTRLQFQALDSTQFATAQGEVPEL-----------------VLVNPPRR 311

Query: 306 GMDIDTCKMV--QGYERILYISCNPETLQENLQVLGETHQVVRFALFDQFPYTHHMEAGV 363
           G+    C  +       I+Y SCN +T+ ++++ L   +++ R  LFD FP+T H E   
Sbjct: 312 GIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDVREL-PGYRIERVQLFDMFPHTAHYEVLT 370

Query: 364 MLERK 368
           +L ++
Sbjct: 371 LLVKQ 375