Pairwise Alignments

Query, 369 a.a., tRNA (uridine(54)-C5)-methyltransferase TrmA from Vibrio cholerae E7946 ATCC 55056

Subject, 463 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Acinetobacter radioresistens SK82

 Score = 72.8 bits (177), Expect = 2e-17
 Identities = 54/188 (28%), Positives = 98/188 (52%), Gaps = 24/188 (12%)

Query: 188 FTQPNAKVAEKMLEWAVDCTQESKGD-LLELYCGNGNFSLALAQ---NFERVLATELAKP 243
           FTQ N+ V  +M+  A +      G+ +L+L+CG GNFSL LA+      +V+A E ++ 
Sbjct: 286 FTQVNSTVNSQMVSLACNLLNLQPGERVLDLFCGLGNFSLPLARCVGETGQVIAVEGSED 345

Query: 244 SVEAAQFNIAANQIGNVQIIRMS-AEEFTQAMEGKREFNRLKDAGVDLQSYRCNTIFVDP 302
            V+    N  +N++ NV+       ++F+     K+ F+ L                +DP
Sbjct: 346 MVKRGTENARSNKLLNVRFYSQDLTKDFSSHSWAKQGFDAL---------------LIDP 390

Query: 303 PRSGMDIDTCKMVQGY--ERILYISCNPETLQENLQVLGE-THQVVRFALFDQFPYTHHM 359
           PR+G + +    +  +  +RI+Y+SCNP TL  +  +L E  +++ +  + D F +T H+
Sbjct: 391 PRAGAE-EVMHYLPNFNAKRIVYVSCNPATLARDAGILVEHGYRLKKAGVMDMFTHTGHV 449

Query: 360 EAGVMLER 367
           E+ V+ E+
Sbjct: 450 ESIVLFEK 457