Pairwise Alignments

Query, 286 a.a., RNA polymerase sigma factor RpoH from Vibrio cholerae E7946 ATCC 55056

Subject, 625 a.a., RNA polymerase sigma factor RpoD from Rhodanobacter sp. FW510-T8

 Score = 95.5 bits (236), Expect = 3e-24
 Identities = 68/234 (29%), Positives = 122/234 (52%), Gaps = 11/234 (4%)

Query: 49  AAKGLILSHLRFVVHVARGYSGYGLPMADLVQEGNIGLMKAVKRFNPEMGVRLVSFAVHW 108
           A K ++ ++LR V+ +A+ Y+  GL   DL+QEGNIGLMKAV +F    G +  ++A  W
Sbjct: 386 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 445

Query: 109 IKAEIHEYVLRNWRIVKIATTKAQRKLFFNLRKSKKRLGWF-NNGEVETVARELGVEPAE 167
           I+  I   +    R ++I     +     N R S++ L  F      E +A+E+ +   +
Sbjct: 446 IRQAITRSIADQARTIRIPVHMIETINKLN-RISRQMLQQFGREATPEELAKEMDMPEDK 504

Query: 168 VREMESRLAAQDAAFEMSAEDDENGMAYTAPVLYLEDKHSDLADNLEAENWEAHTTQRLS 227
           +R++  ++A +  + E    DDE+         ++ED ++    +   E     T + + 
Sbjct: 505 IRKV-LKIAKEPISMETPIGDDEDSHLGD----FIEDGNASSPIDSATETGLMETVRDV- 558

Query: 228 MALASLDERSQHIVRARW-LDDDNKTTLQDLAEMYGVSAERIRQLEKNAMRKLK 280
             LA L  R   ++R R+ +D +   TL+++ + + V+ ERIRQ+E  A+RKL+
Sbjct: 559 --LAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLR 610