Pairwise Alignments

Query, 286 a.a., RNA polymerase sigma factor RpoH from Vibrio cholerae E7946 ATCC 55056

Subject, 313 a.a., RNA polymerase sigma factor RpoH from Variovorax sp. SCN45

 Score =  261 bits (668), Expect = 1e-74
 Identities = 141/289 (48%), Positives = 192/289 (66%), Gaps = 19/289 (6%)

Query: 15  SLDSYIRSVNGYPMLSADEERELAERLHYKGDIDAAKGLILSHLRFVVHVARGYSGYGLP 74
           +LD+YI + N  PML+ +EE+  A +L  + D+++A  L+LSHLR VV ++R Y GYGLP
Sbjct: 26  NLDAYISAANRLPMLTLEEEQGFARKLRDQNDLESAGALVLSHLRLVVSISRQYLGYGLP 85

Query: 75  MADLVQEGNIGLMKAVKRFNPEMGVRLVSFAVHWIKAEIHEYVLRNWRIVKIATTKAQRK 134
             DL+QEGN+GLMKAVKRF+P+ GVRLVS+A+HWIKAEIHEY+L+NWR+VK+ATTKAQRK
Sbjct: 86  HGDLIQEGNVGLMKAVKRFDPDQGVRLVSYAMHWIKAEIHEYILKNWRMVKVATTKAQRK 145

Query: 135 LFFNLRKSKKRL----GWFNNG---------EVETVARELGVEPAEVREMESRLAAQDAA 181
           LFFNLR  K+         +NG         EV  +A  L V+P EV EME+RL+  D  
Sbjct: 146 LFFNLRSMKQGFKADSAAADNGTHRETLSPDEVSQMATRLNVKPEEVLEMETRLSGGDVM 205

Query: 182 FEMSAEDDENGMAYTAPVLYLEDKHSDLADNLEAENWEAHTTQRLSMALASLDERSQHIV 241
            +    DD  G     P+ YL D   +    LE++  +  ++  ++ AL +LD+RS+ IV
Sbjct: 206 LDPGPSDD--GEEAFGPIAYLADATQEPTALLESQQRDRLSSDGIATALEALDDRSRRIV 263

Query: 242 RARWL----DDDNKTTLQDLAEMYGVSAERIRQLEKNAMRKLKEAVGEF 286
             RWL    D     TL DLA +YGVSAERIRQ+E  AM+K+K+A+ ++
Sbjct: 264 EERWLKVNDDGSGGMTLHDLAAVYGVSAERIRQIEVAAMKKMKKALADY 312