Pairwise Alignments

Query, 286 a.a., RNA polymerase sigma factor RpoH from Vibrio cholerae E7946 ATCC 55056

Subject, 335 a.a., RNA polymerase sigma factor RpoS from Vibrio cholerae E7946 ATCC 55056

 Score = 97.8 bits (242), Expect = 3e-25
 Identities = 79/276 (28%), Positives = 137/276 (49%), Gaps = 20/276 (7%)

Query: 12  SQDSLDSYIRSVNGYPMLSADEERELAERLHYKGDIDAAKGLILSHLRFVVHVARGYSGY 71
           S D+   Y+  +   P+L+A+EE   A R   +GD  A K +I S+LR VV ++R YS  
Sbjct: 55  SLDATQMYLSEIGFSPLLTAEEEVLYARRA-LRGDEAARKRMIESNLRLVVKISRRYSNR 113

Query: 72  GLPMADLVQEGNIGLMKAVKRFNPEMGVRLVSFAVHWIKAEIHEYVLRNWRIVK--IATT 129
           GL + DL++EGN+GL++AV++F+PE G R  ++A  WI+  I   ++   R ++  I   
Sbjct: 114 GLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRLPIHVV 173

Query: 130 KAQRKLFFNLRKSKKRLGWFNNGEVETVARELGVEPAEVREM---ESRLAAQDAAFEMSA 186
           K         R+  +RL   +    E +A EL     +V +M     R+++ D       
Sbjct: 174 KELNIYLRTARELSQRLD--HEPTPEEIALELDRPVDDVTKMLRLNERISSVDTPI---- 227

Query: 187 EDDENGMAYTAPVLYLEDKHSDLADNLEAENWEAHTTQRLSMALASLDERSQHIVRARW- 245
                G    A +  L D H+  AD  E    +    + L   L  L+ + + ++  R+ 
Sbjct: 228 ----GGDGDKALLDILPDSHN--ADP-EFSTQDDDIRESLLNWLDELNPKQKEVLARRFG 280

Query: 246 LDDDNKTTLQDLAEMYGVSAERIRQLEKNAMRKLKE 281
           L     +TL+++     ++ ER+RQ++   +R+L+E
Sbjct: 281 LLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLRE 316