Pairwise Alignments

Query, 286 a.a., RNA polymerase sigma factor RpoH from Vibrio cholerae E7946 ATCC 55056

Subject, 304 a.a., RNA polymerase sigma factor RpoH from Sphingobium sp. HT1-2

 Score =  197 bits (500), Expect = 3e-55
 Identities = 114/284 (40%), Positives = 175/284 (61%), Gaps = 17/284 (5%)

Query: 9   ALVSQDSLDSYIRSVNGYPMLSADEERELAERLHYKGDIDAAKGLILSHLRFVVHVARGY 68
           AL  + SL+ Y+  +  +P+L+ ++E  LA+R     D +AA  L+ SHLR V  +A GY
Sbjct: 12  ALGGEASLNRYLSEIRKFPLLTPEQEYMLAKRYEEHQDPEAAAQLVTSHLRLVAKIAMGY 71

Query: 69  SGYGLPMADLVQEGNIGLMKAVKRFNPEMGVRLVSFAVHWIKAEIHEYVLRNWRIVKIAT 128
            GYGLP+++L+ EGNIGLM+ VK+F  E G RL ++A+ WI+A I E++LR+W +VK+ T
Sbjct: 72  RGYGLPVSELISEGNIGLMQGVKKFEAERGFRLATYAMWWIRASIQEFILRSWSLVKMGT 131

Query: 129 TKAQRKLFFNLRKSKKRLGWFNNG-----EVETVARELGVEPAEVREMESRLA-AQDAAF 182
           T +Q+KLFFNLR+ K  +  F +G     +V  +A +LGV   +V  M  R+A   D + 
Sbjct: 132 TASQKKLFFNLRRMKNNIEAFEDGDLRPEDVTKIATDLGVSEDDVVSMNRRMAMGGDTSL 191

Query: 183 EMSAEDDENGMAYTAPVLYLEDKHSDLADNLEAENWEAHTTQRLSM---ALASLDERSQH 239
            +   +D +G        +L+D    L D   AE  E   TQR  M   A+  L++R +H
Sbjct: 192 NVPMREDGDGQWQD----WLQDT-DPLQDERVAE--EQERTQRHEMLVEAMTDLNDREKH 244

Query: 240 IVRARWLDDDNKTTLQDLAEMYGVSAERIRQLEKNAMRKLKEAV 283
           I+  R L ++ K TL++L+++YGVS ER+RQ+E  A  KL++A+
Sbjct: 245 ILAERRLAEEPK-TLEELSQVYGVSRERVRQIEVRAFEKLQKAM 287