Pairwise Alignments

Query, 286 a.a., RNA polymerase sigma factor RpoH from Vibrio cholerae E7946 ATCC 55056

Subject, 679 a.a., RNA polymerase sigma factor RpoD from Sphingobium sp. HT1-2

 Score = 97.1 bits (240), Expect = 1e-24
 Identities = 68/235 (28%), Positives = 123/235 (52%), Gaps = 13/235 (5%)

Query: 49  AAKGLILSHLRFVVHVARGYSGYGLPMADLVQEGNIGLMKAVKRFNPEMGVRLVSFAVHW 108
           A K ++ ++LR V+ +A+ Y+  GL   DL+QEGNIGLMKAV +F    G +  ++A  W
Sbjct: 441 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 500

Query: 109 IKAEIHEYVLRNWRIVKIATTKAQ--RKLFFNLRKSKKRLGWFNNGEVETVARELGVEPA 166
           I+  I   +    R ++I     +   KL    R+     G       E +A  L +   
Sbjct: 501 IRQAITRSIADQARTIRIPVHMIETINKLVRTSRQFLHEQG--REPTPEEMAERLSMPLE 558

Query: 167 EVREMESRLAAQDAAFEMSAEDDENGMAYTAPVLYLEDKHSDLADNLEAENWEAHTTQRL 226
           +VR++  ++A +  + E    D+E+         ++EDK++ +  +      +A+  + +
Sbjct: 559 KVRKV-MKIAKEPISLETPIGDEEDSHLGD----FIEDKNAIIPVDAAI---QANLKETV 610

Query: 227 SMALASLDERSQHIVRARW-LDDDNKTTLQDLAEMYGVSAERIRQLEKNAMRKLK 280
           +  LASL  R + ++R R+ +  +   TL+++ + + V+ ERIRQ+E  A+RKLK
Sbjct: 611 TRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLK 665