Pairwise Alignments

Query, 286 a.a., RNA polymerase sigma factor RpoH from Vibrio cholerae E7946 ATCC 55056

Subject, 284 a.a., RNA polymerase factor sigma-32 from Pseudomonas putida KT2440

 Score =  346 bits (887), Expect = e-100
 Identities = 174/284 (61%), Positives = 218/284 (76%), Gaps = 3/284 (1%)

Query: 1   MTNQAYPM-ALVSQDSLDSYIRSVNGYPMLSADEERELAERLHYKGDIDAAKGLILSHLR 59
           MT    P  ALV   +L++Y+ +VN  P+L+ ++ER+L ERL+Y+ D++AA+ ++++HLR
Sbjct: 1   MTTSLQPAYALVPGANLEAYVHTVNSIPLLTVEQERDLGERLYYEQDVEAARQMVMAHLR 60

Query: 60  FVVHVARGYSGYGLPMADLVQEGNIGLMKAVKRFNPEMGVRLVSFAVHWIKAEIHEYVLR 119
           FVVH+AR Y+GYGL  ADL+QEGN+GLMKAVKRFNPEMGVRLVSFAVHWIKAEIHE++LR
Sbjct: 61  FVVHIARSYAGYGLAQADLIQEGNVGLMKAVKRFNPEMGVRLVSFAVHWIKAEIHEFILR 120

Query: 120 NWRIVKIATTKAQRKLFFNLRKSKKRLGWFNNGEVETVARELGVEPAEVREMESRLAAQD 179
           NWRIVK+ATTKAQRKLFFNLR  KKRL W NN EV  VA  LGVEP EVREMESRL+ QD
Sbjct: 121 NWRIVKVATTKAQRKLFFNLRSQKKRLAWLNNDEVHRVAESLGVEPREVREMESRLSGQD 180

Query: 180 AAFEMSAEDDENGMAYTAPVLYLEDKHSDLADNLEAENWEAHTTQRLSMALASLDERSQH 239
            AF+ +AE D++  A+ +P  YLED   D A  LE  +W  ++T  L  AL  LDERS+ 
Sbjct: 181 MAFDPAAEADDDS-AFQSPAHYLEDHRYDPAVQLEDADWSDNSTSNLHEALQGLDERSRD 239

Query: 240 IVRARWLDDDNKTTLQDLAEMYGVSAERIRQLEKNAMRKLKEAV 283
           I+  RWL ++ K TL +LA+ Y VSAERIRQLEKNAM K+K  +
Sbjct: 240 ILYQRWLAEE-KATLHELADKYSVSAERIRQLEKNAMNKVKALI 282