Pairwise Alignments

Query, 286 a.a., RNA polymerase sigma factor RpoH from Vibrio cholerae E7946 ATCC 55056

Subject, 335 a.a., RNA polymerase, sigma S (sigma 38) factor from Pseudomonas putida KT2440

 Score =  107 bits (268), Expect = 3e-28
 Identities = 77/273 (28%), Positives = 143/273 (52%), Gaps = 18/273 (6%)

Query: 14  DSLDSYIRSVNGYPMLSADEERELAERLHYKGDIDAAKGLILSHLRFVVHVARGYSGYGL 73
           D+   Y+  +   P+LS +EE   A RL  KGD    K +I S+LR VV +AR Y   GL
Sbjct: 62  DATQLYLNEIGFSPLLSPEEEVHFA-RLSQKGDPAGRKRMIESNLRLVVKIARRYVNRGL 120

Query: 74  PMADLVQEGNIGLMKAVKRFNPEMGVRLVSFAVHWIKAEIHEYVLRNWRIVKIATTKAQR 133
            + DL++EGN+GL++AV++F+PE G R  ++A  WI+  I   ++   R +++      +
Sbjct: 121 SLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRL-PIHVVK 179

Query: 134 KLFFNLRKSKKRLGWFNN-GEVETVARELGVEPAEVREM---ESRLAAQDAAFEMSAEDD 189
           +L   LR +++     ++    E +A  L    AEV+ M     R+++ D +      D 
Sbjct: 180 ELNVYLRAARELTQKLDHEPSPEEIATLLEKPVAEVKRMLGLNERVSSVDVSL---GPDS 236

Query: 190 ENGMAYTAPVLYLEDKHSDLADNLEAENWEAHTTQRLSMALASLDERSQHIVRARW-LDD 248
           +  +  T      +D+ +D  + L+ ++     +Q +   L  L ++ + +V  R+ L  
Sbjct: 237 DKTLLDT----LTDDRPTDPCELLQDDD----LSQSIDQWLGELTDKQREVVVRRFGLRG 288

Query: 249 DNKTTLQDLAEMYGVSAERIRQLEKNAMRKLKE 281
              +TL+D+    G++ ER+RQ++   +++L+E
Sbjct: 289 HESSTLEDVGLEIGLTRERVRQIQVEGLKRLRE 321