Pairwise Alignments

Query, 286 a.a., RNA polymerase sigma factor RpoH from Vibrio cholerae E7946 ATCC 55056

Subject, 287 a.a., RNA polymerase subunit sigma from Pontibacter actiniarum KMM 6156, DSM 19842

 Score =  116 bits (291), Expect = 5e-31
 Identities = 83/274 (30%), Positives = 146/274 (53%), Gaps = 24/274 (8%)

Query: 15  SLDSYIRSVNGYPMLSADEERELAERLHYKGDIDAAKGLILSHLRFVVHVARGYSGYGLP 74
           SLD Y++ +    +L+ DEE  LA+R+  +GD  A + L  ++LRFVV VA+ Y   GL 
Sbjct: 17  SLDKYLQEIGKVDLLTPDEEVSLAQRIK-EGDQFALEKLTKANLRFVVSVAKQYQNQGLS 75

Query: 75  MADLVQEGNIGLMKAVKRFNPEMGVRLVSFAVHWIKAEIHEYVLRNWRIVKIATTKAQRK 134
           + DL+ EGN+GL+KA KRF+   G + +S+AV WI+  I + +    RIV++   +    
Sbjct: 76  LGDLINEGNLGLIKAAKRFDETRGFKFISYAVWWIRQSILQALAEQSRIVRLPLNRVGSL 135

Query: 135 LFFNLRKSKKRLGWFNNGEVETVARELGVEPAEV---REMESRLAAQDAAFEMSAEDDEN 191
              +   S+    +      E +A  L +  AEV    ++  R  + DA F    + +EN
Sbjct: 136 NKISKSFSELEQKFEREPSPEEIAEVLELTTAEVVDTLKISGRHVSVDAPF---VQGEEN 192

Query: 192 GMAYTAPVLYLEDKHSD----LADNLEAENWEAHTTQRLSMALASLDERSQHIVRARW-L 246
            +     VL  ED+ S     + D+L  E         +  AL++L +R   ++   + L
Sbjct: 193 RL---LDVLENEDEESPDMGLMNDSLRKE---------VQRALSTLTKREADVITLYFGL 240

Query: 247 DDDNKTTLQDLAEMYGVSAERIRQLEKNAMRKLK 280
           + ++  TL+++ E + ++ ER+RQ+++ A+R+L+
Sbjct: 241 NGEHSLTLEEIGEKFNLTRERVRQIKEKAIRRLR 274