Pairwise Alignments

Query, 286 a.a., RNA polymerase sigma factor RpoH from Vibrio cholerae E7946 ATCC 55056

Subject, 315 a.a., RNA polymerase sigma factor RpoH from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  269 bits (687), Expect = 7e-77
 Identities = 147/298 (49%), Positives = 199/298 (66%), Gaps = 18/298 (6%)

Query: 5   AYPMALVSQ-DSLDSYIRSVNGYPMLSADEERELAERLHYKGDIDAAKGLILSHLRFVVH 63
           A P ALV    +LD+YI +VN  P+L+ ++E++ A RL    D+DAA  L++SHLR VV 
Sbjct: 19  ANPWALVPPLGNLDAYISAVNRLPLLTLEQEQQAARRLRDDNDLDAAGQLVMSHLRLVVS 78

Query: 64  VARGYSGYGLPMADLVQEGNIGLMKAVKRFNPEMGVRLVSFAVHWIKAEIHEYVLRNWRI 123
           ++R Y GYGLP  DL+QEGN+GLMKAVKRF+P+ GVRLVS+A+HWIKAEIHEY+L+NWR+
Sbjct: 79  ISRQYLGYGLPHGDLIQEGNVGLMKAVKRFDPDQGVRLVSYAMHWIKAEIHEYILKNWRM 138

Query: 124 VKIATTKAQRKLFFNLRKSKK-----------RLGWFNNGEVETVARELGVEPAEVREME 172
           VK+ATTKAQRKLFFNLR  K+                ++ EV  +AREL V+P EVREME
Sbjct: 139 VKLATTKAQRKLFFNLRSRKQGFRADALDGDTHREVLSDNEVGVMARELNVKPEEVREME 198

Query: 173 SRLAAQDAAFEMSAEDDENGMAYTAPVLYLEDKHSDLADNLEAENWEAHTTQRLSMALAS 232
           +RL+  D   + +  DD  G     P+ YL D   +    LE+   +A  T+ ++ A++ 
Sbjct: 199 TRLSGGDVVLDPAPGDD--GEDSFGPIAYLADATHEPTAVLESAQRDALATEGVARAMSE 256

Query: 233 LDERSQHIVRARWL----DDDNKTTLQDLAEMYGVSAERIRQLEKNAMRKLKEAVGEF 286
           LDERS+ IV  RWL    D     TL +LA  YGVSAER+RQ+E  AM+K+++A+  +
Sbjct: 257 LDERSRRIVSERWLKVNDDGSGGMTLHELAAEYGVSAERVRQIEVAAMKKMRKALAAY 314