Pairwise Alignments

Query, 286 a.a., RNA polymerase sigma factor RpoH from Vibrio cholerae E7946 ATCC 55056

Subject, 330 a.a., RNA polymerase sigma factor RpoS from Pectobacterium carotovorum WPP14

 Score =  103 bits (257), Expect = 5e-27
 Identities = 77/295 (26%), Positives = 142/295 (48%), Gaps = 38/295 (12%)

Query: 1   MTNQAYPMALVSQDSLDSYIRSVNGYPMLSADEERELAERLHYKGDIDAAKGLILSHLRF 60
           + +Q  P  ++  D+   Y+  +   P+L+A+EE   A R   +GD+ + + +I S+LR 
Sbjct: 45  LLSQGVPQRVL--DATQLYLGEIGYSPLLTAEEEVYFARRA-LRGDVPSRRRMIESNLRL 101

Query: 61  VVHVARGYSGYGLPMADLVQEGNIGLMKAVKRFNPEMGVRLVSFAVHWIKAEIHEYVLRN 120
           VV +AR Y+  GL + DL++EGN+GL++AV++F+PE G R  ++A  WI+  I   ++  
Sbjct: 102 VVKIARRYNNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQ 161

Query: 121 WRIVK--IATTKAQRKLFFNLRKSKKRLGWFNNGEVETVARELGVEPAEVREM---ESRL 175
            R ++  I   K         R+   +L   +    E +A +L     +V  M     R+
Sbjct: 162 TRTIRLPIHIVKELNVYLRTARELSHKLD--HEPSAEEIAEQLDKPVDDVNRMLRLNERI 219

Query: 176 AAQD---------AAFEMSAEDDENGMAYTAPVLYLEDKHSDLADNLEAENWEAHTTQRL 226
            + D         A  ++ A++ +NG   T        + +D+  N+    +E +  QR 
Sbjct: 220 TSVDTPLGGDSEKALLDILADEKDNGPEDTT-------QDNDMKQNIVKWLFELNAKQR- 271

Query: 227 SMALASLDERSQHIVRARWLDDDNKTTLQDLAEMYGVSAERIRQLEKNAMRKLKE 281
                      + + R   L      TL+D+    G++ ER+RQ++   +R+L+E
Sbjct: 272 -----------EVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLRE 315