Pairwise Alignments

Query, 286 a.a., RNA polymerase sigma factor RpoH from Vibrio cholerae E7946 ATCC 55056

Subject, 296 a.a., RNA polymerase sigma factor RpoH from Magnetospirillum magneticum AMB-1

 Score =  205 bits (521), Expect = 1e-57
 Identities = 114/288 (39%), Positives = 170/288 (59%), Gaps = 10/288 (3%)

Query: 1   MTNQAYPMALVSQDSLDSYIRSVNGYPMLSADEERELAERLHYKGDIDAAKGLILSHLRF 60
           MT  A  ++L  + +L  Y++ +  +PML  +EE  LA+R    GD+ AA  L+ SHLR 
Sbjct: 1   MTAIASSLSLAPEGNLTRYLQDIRKFPMLPPEEEYLLAKRFREHGDLPAANRLVTSHLRL 60

Query: 61  VVHVARGYSGYGLPMADLVQEGNIGLMKAVKRFNPEMGVRLVSFAVHWIKAEIHEYVLRN 120
           V  +A GY GYGLP+ +L+ EGN+G+M+AV+RF+PE G RL ++A+ WI+A I EY+L +
Sbjct: 61  VAKIAMGYRGYGLPLGELISEGNVGMMQAVRRFDPERGFRLATYAMWWIRAAIQEYILHS 120

Query: 121 WRIVKIATTKAQRKLFFNLRKSKKRLGWFNNGE-----VETVARELGVEPAEVREMESRL 175
           W +VK+ TT AQ+KLFFNLRK K ++     G+     V  +A +L V   EV  M  RL
Sbjct: 121 WSLVKMGTTAAQKKLFFNLRKLKGQMQAIEEGDMSAENVAKIATKLEVTEDEVVTMNRRL 180

Query: 176 AAQDAAFEMSAEDDENGMAYTAPVLYLEDKHSDLADNLEAENWEAHTTQRLSMALASLDE 235
           ++ D +       +  G        +L D H D    L          Q L+ AL +L++
Sbjct: 181 SSPDHSLNAPVRAEGEGEWQD----WLVDDHEDQETELGEREELGQRRQMLTSALEALND 236

Query: 236 RSQHIVRARWLDDDNKTTLQDLAEMYGVSAERIRQLEKNAMRKLKEAV 283
           R + I+  R L +D   TL+DL++ YG+S ER+RQ+E  A  KL+++V
Sbjct: 237 RERAILIQRRLTED-PATLEDLSQRYGISRERVRQIEVRAFEKLQKSV 283