Pairwise Alignments

Query, 286 a.a., RNA polymerase sigma factor RpoH from Vibrio cholerae E7946 ATCC 55056

Subject, 292 a.a., RNA polymerase sigma factor RpoH from Magnetospirillum magneticum AMB-1

 Score =  201 bits (511), Expect = 2e-56
 Identities = 119/283 (42%), Positives = 169/283 (59%), Gaps = 19/283 (6%)

Query: 10  LVSQDSLDSYIRSVNGYPMLSADEERELAERLHYKGDIDAAKGLILSHLRFVVHVARGYS 69
           +   D L  Y+R +  +P+L+ +EE  LA+R     D DAA  L+ SHLR V  +A GY 
Sbjct: 9   VAGDDGLAKYLRDIKEFPVLAPEEEFMLAKRWVDYEDTDAAHRLVTSHLRLVAKIALGYR 68

Query: 70  GYGLPMADLVQEGNIGLMKAVKRFNPEMGVRLVSFAVHWIKAEIHEYVLRNWRIVKIATT 129
            YGLP+ADL+ EGNIGLM+AVK+F P+ G RL ++A+ WIKA ++E+VL +W +VKI T 
Sbjct: 69  HYGLPVADLISEGNIGLMRAVKKFEPDRGFRLATYAMWWIKASLNEFVLNSWSMVKIGTL 128

Query: 130 KAQRKLFFNLRKSKKRLGWFNNGE-----VETVARELGVEPAEVREMESRLAAQDAAFEM 184
            AQ+KLFFNLR+ K RL     G+     V T+AREL V+  +V  M  R+A +D++  +
Sbjct: 129 AAQKKLFFNLRRIKSRLRLLEAGDLAPEHVATIARELDVDERDVVAMNRRMAGRDSS--L 186

Query: 185 SAEDDENGMAYTAPVLYLEDKHSDLADNLEAENWEAHTTQR----LSMALASLDERSQHI 240
           +A   E G         ++D  +D ADN E    +     +    ++ AL SL ER + +
Sbjct: 187 NAPVGEGGTE-------IQDLMADEADNQETAYGKREELSKGRVLIARALDSLTEREREV 239

Query: 241 VRARWLDDDNKTTLQDLAEMYGVSAERIRQLEKNAMRKLKEAV 283
              R L DD   TL++L   YGVS ERIRQ+E  A  K+++ V
Sbjct: 240 FVERRLRDD-PVTLEELGGRYGVSRERIRQIEVKAFEKVRDLV 281