Pairwise Alignments

Query, 286 a.a., RNA polymerase sigma factor RpoH from Vibrio cholerae E7946 ATCC 55056

Subject, 285 a.a., RNA polymerase sigma factor RpoH from Serratia liquefaciens MT49

 Score =  422 bits (1085), Expect = e-123
 Identities = 204/283 (72%), Positives = 242/283 (85%)

Query: 1   MTNQAYPMALVSQDSLDSYIRSVNGYPMLSADEERELAERLHYKGDIDAAKGLILSHLRF 60
           MT +   +ALV Q SL++YIR+ N YPML+A+EERELAERLHY+GD++AAK LILSHLRF
Sbjct: 1   MTKEMQTLALVPQGSLEAYIRAANTYPMLTAEEERELAERLHYQGDLEAAKQLILSHLRF 60

Query: 61  VVHVARGYSGYGLPMADLVQEGNIGLMKAVKRFNPEMGVRLVSFAVHWIKAEIHEYVLRN 120
           V H+AR YSGYGLP ADL+QEGNIGLMKAV+RFNPE+GVRLVSFAVHWIKAEIHEYVLRN
Sbjct: 61  VAHIARNYSGYGLPQADLIQEGNIGLMKAVRRFNPEVGVRLVSFAVHWIKAEIHEYVLRN 120

Query: 121 WRIVKIATTKAQRKLFFNLRKSKKRLGWFNNGEVETVARELGVEPAEVREMESRLAAQDA 180
           WRIVK+ATTKAQRKLFFNLRK+K+RLGWFN  EVE VARELGV   +VREMESR+AAQD 
Sbjct: 121 WRIVKVATTKAQRKLFFNLRKTKQRLGWFNQDEVELVARELGVTSKDVREMESRMAAQDM 180

Query: 181 AFEMSAEDDENGMAYTAPVLYLEDKHSDLADNLEAENWEAHTTQRLSMALASLDERSQHI 240
            F+ + +D+       APVLYL+DK SD A+ +E +NWE++   +L+ AL  LDERSQHI
Sbjct: 181 TFDPTPDDEARDGQSMAPVLYLQDKSSDFAEGIEEDNWESNAADKLAYALEGLDERSQHI 240

Query: 241 VRARWLDDDNKTTLQDLAEMYGVSAERIRQLEKNAMRKLKEAV 283
           +RARWLDDDNK+TLQ+LA+ YGVSAER+RQLEKNAM+KLK A+
Sbjct: 241 IRARWLDDDNKSTLQELADQYGVSAERVRQLEKNAMKKLKMAI 283