Pairwise Alignments

Query, 286 a.a., RNA polymerase sigma factor RpoH from Vibrio cholerae E7946 ATCC 55056

Subject, 615 a.a., RNA polymerase sigma factor RpoD from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score = 92.4 bits (228), Expect = 2e-23
 Identities = 69/236 (29%), Positives = 121/236 (51%), Gaps = 15/236 (6%)

Query: 49  AAKGLILSHLRFVVHVARGYSGYGLPMADLVQEGNIGLMKAVKRFNPEMGVRLVSFAVHW 108
           A K ++ ++LR V+ +A+ Y+  GL   DL+QEGNIGLMKAV +F    G +  ++A  W
Sbjct: 377 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 436

Query: 109 IKAEIHEYVLRNWRIVKIATTKAQ--RKLFFNLRKSKKRLGWFNNGEVETVARELGVEPA 166
           I+  I   +    R ++I     +   KL    R+  + +G       E +A  + +   
Sbjct: 437 IRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMG--REPTPEELAERMLMPED 494

Query: 167 EVREMESRLAAQDAAFEMSAEDDENGMAYTAPVLYLEDKHSDL-ADNLEAENWEAHTTQR 225
           ++R++  ++A +  + E    DDE+         ++ED   +L  D+   E+  A T   
Sbjct: 495 KIRKV-PKIAKEPISMETPIGDDEDSHLGD----FIEDTTLELPLDSATTESLRAATHD- 548

Query: 226 LSMALASLDERSQHIVRARW-LDDDNKTTLQDLAEMYGVSAERIRQLEKNAMRKLK 280
               LA L  R   ++R R+ +D +   TL+++ + + V+ ERIRQ+E  A+RKL+
Sbjct: 549 ---VLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLR 601