Pairwise Alignments

Query, 286 a.a., RNA polymerase sigma factor RpoH from Vibrio cholerae E7946 ATCC 55056

Subject, 284 a.a., RNA polymerase sigma factor (NCBI) from Escherichia coli BW25113

 Score =  412 bits (1059), Expect = e-120
 Identities = 201/283 (71%), Positives = 240/283 (84%), Gaps = 1/283 (0%)

Query: 1   MTNQAYPMALVSQDSLDSYIRSVNGYPMLSADEERELAERLHYKGDIDAAKGLILSHLRF 60
           MT++   +AL    +LDSYIR+ N +PMLSADEER LAE+LHY GD++AAK LILSHLRF
Sbjct: 1   MTDKMQSLALAPVGNLDSYIRAANAWPMLSADEERALAEKLHYHGDLEAAKTLILSHLRF 60

Query: 61  VVHVARGYSGYGLPMADLVQEGNIGLMKAVKRFNPEMGVRLVSFAVHWIKAEIHEYVLRN 120
           VVH+AR Y+GYGLP ADL+QEGNIGLMKAV+RFNPE+GVRLVSFAVHWIKAEIHEYVLRN
Sbjct: 61  VVHIARNYAGYGLPQADLIQEGNIGLMKAVRRFNPEVGVRLVSFAVHWIKAEIHEYVLRN 120

Query: 121 WRIVKIATTKAQRKLFFNLRKSKKRLGWFNNGEVETVARELGVEPAEVREMESRLAAQDA 180
           WRIVK+ATTKAQRKLFFNLRK+K+RLGWFN  EVE VARELGV   +VREMESR+AAQD 
Sbjct: 121 WRIVKVATTKAQRKLFFNLRKTKQRLGWFNQDEVEMVARELGVTSKDVREMESRMAAQDM 180

Query: 181 AFEMSAEDDENGMAYTAPVLYLEDKHSDLADNLEAENWEAHTTQRLSMALASLDERSQHI 240
            F++S++DD +     APVLYL+DK S+ AD +E +NWE     RL+ A+  LDERSQ I
Sbjct: 181 TFDLSSDDDSDSQP-MAPVLYLQDKSSNFADGIEDDNWEEQAANRLTDAMQGLDERSQDI 239

Query: 241 VRARWLDDDNKTTLQDLAEMYGVSAERIRQLEKNAMRKLKEAV 283
           +RARWLD+DNK+TLQ+LA+ YGVSAER+RQLEKNAM+KL+ A+
Sbjct: 240 IRARWLDEDNKSTLQELADRYGVSAERVRQLEKNAMKKLRAAI 282