Pairwise Alignments

Query, 286 a.a., RNA polymerase sigma factor RpoH from Vibrio cholerae E7946 ATCC 55056

Subject, 284 a.a., RNA polymerase sigma factor RpoH from Erwinia tracheiphila SCR3

 Score =  407 bits (1047), Expect = e-118
 Identities = 199/283 (70%), Positives = 238/283 (84%), Gaps = 1/283 (0%)

Query: 1   MTNQAYPMALVSQDSLDSYIRSVNGYPMLSADEERELAERLHYKGDIDAAKGLILSHLRF 60
           MT +   +A+    +LDSYIR+ N +PML+A+EE+ LAERLHY+GD++AAK LILSHLRF
Sbjct: 1   MTKEMQTLAIAPLGNLDSYIRAANAWPMLTAEEEKALAERLHYQGDLEAAKTLILSHLRF 60

Query: 61  VVHVARGYSGYGLPMADLVQEGNIGLMKAVKRFNPEMGVRLVSFAVHWIKAEIHEYVLRN 120
           VVHVAR YSGYGLP ADL+QEGNIGLMKAV+RFNPE+GVRLVSFAVHWIKAEIHEYVLRN
Sbjct: 61  VVHVARNYSGYGLPQADLIQEGNIGLMKAVRRFNPEVGVRLVSFAVHWIKAEIHEYVLRN 120

Query: 121 WRIVKIATTKAQRKLFFNLRKSKKRLGWFNNGEVETVARELGVEPAEVREMESRLAAQDA 180
           WRIVK+ATTKAQRKLFFNLRK+K+RLGWFN  EVE VARELGV   +V EMESR+AAQD 
Sbjct: 121 WRIVKVATTKAQRKLFFNLRKAKQRLGWFNQDEVEMVARELGVSSKDVLEMESRMAAQDM 180

Query: 181 AFEMSAEDDENGMAYTAPVLYLEDKHSDLADNLEAENWEAHTTQRLSMALASLDERSQHI 240
            F+ + E++  G +  AP+LYL+DK SD A  +E +NWE+H   +LS A+  LDERSQ I
Sbjct: 181 TFDPTPEEEGEGRS-MAPMLYLQDKSSDFAGGIEEDNWESHAVDKLSDAMRELDERSQDI 239

Query: 241 VRARWLDDDNKTTLQDLAEMYGVSAERIRQLEKNAMRKLKEAV 283
           +RARWLDDDNK TLQ+LA+ YGVSAER+RQLEKNAM+KL+ A+
Sbjct: 240 IRARWLDDDNKITLQELADKYGVSAERVRQLEKNAMKKLRVAI 282