Pairwise Alignments

Query, 286 a.a., RNA polymerase sigma factor RpoH from Vibrio cholerae E7946 ATCC 55056

Subject, 331 a.a., RNA polymerase sigma factor RpoS from Erwinia tracheiphila SCR3

 Score =  101 bits (251), Expect = 3e-26
 Identities = 73/273 (26%), Positives = 142/273 (52%), Gaps = 17/273 (6%)

Query: 14  DSLDSYIRSVNGYPMLSADEERELAERLHYKGDIDAAKGLILSHLRFVVHVARGYSGYGL 73
           D+   Y+  +   P+L+A+EE   A R   +GDI + + +I S+LR VV +AR YS  GL
Sbjct: 56  DATQLYLGEIGYSPLLTAEEEVFFARRA-LRGDIPSRRRMIESNLRLVVKIARRYSNRGL 114

Query: 74  PMADLVQEGNIGLMKAVKRFNPEMGVRLVSFAVHWIKAEIHEYVLRNWRIVKIATTKAQR 133
            + DL++EGN+GL++AV++F+PE G R  ++A  WI+  I   ++   R +++      +
Sbjct: 115 ALLDLIEEGNLGLIRAVEKFDPEKGFRFSTYATWWIRQTIERAIMNQTRTIRL-PIHIVK 173

Query: 134 KLFFNLRKSKKRLGWFNN-GEVETVARELGVEPAEVREM---ESRLAAQDAAFEMSAEDD 189
           +L   LR +++     ++    E +A +L     +V  M     R+ + D    +  + D
Sbjct: 174 ELNVYLRTARELAHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTTL-LGGDSD 232

Query: 190 ENGMAYTAPVLYLEDKHSDLADNLEAENWEAHTTQRLSMALASLDERSQHIVRARW-LDD 248
           +  +   A     ++K +   D  + ++ +    Q +   L  L+ + + ++  R+ L  
Sbjct: 233 KALLDILA-----DEKDNGPEDCTQDDDMK----QSIVKWLFELNAKQREVLARRFGLLG 283

Query: 249 DNKTTLQDLAEMYGVSAERIRQLEKNAMRKLKE 281
               TL+D+    G++ ER+RQ++   +R+L+E
Sbjct: 284 YEAATLEDVGSEIGLTRERVRQIQVEGLRRLRE 316