Pairwise Alignments

Query, 286 a.a., RNA polymerase sigma factor RpoH from Vibrio cholerae E7946 ATCC 55056

Subject, 285 a.a., alternative sigma factor RpoH from Enterobacter asburiae PDN3

 Score =  410 bits (1053), Expect = e-119
 Identities = 198/283 (69%), Positives = 240/283 (84%)

Query: 1   MTNQAYPMALVSQDSLDSYIRSVNGYPMLSADEERELAERLHYKGDIDAAKGLILSHLRF 60
           MT +   +AL    +L+SYIR+ N +PML+A+EE+ELAE+LHY+GD++AAK LILSHLRF
Sbjct: 1   MTKEMQTLALAPVGNLESYIRAANTWPMLTAEEEKELAEKLHYQGDLEAAKTLILSHLRF 60

Query: 61  VVHVARGYSGYGLPMADLVQEGNIGLMKAVKRFNPEMGVRLVSFAVHWIKAEIHEYVLRN 120
           VVHVAR Y+GYGLP ADL+QEGNIGLMKAV+RFNPE+GVRLVSFAVHWIKAEIHEYVLRN
Sbjct: 61  VVHVARNYAGYGLPQADLIQEGNIGLMKAVRRFNPEVGVRLVSFAVHWIKAEIHEYVLRN 120

Query: 121 WRIVKIATTKAQRKLFFNLRKSKKRLGWFNNGEVETVARELGVEPAEVREMESRLAAQDA 180
           WRIVK+ATTKAQRKLFFNLRK+K+RLGWFN  EVE VARELGV   +VREMESR+AAQD 
Sbjct: 121 WRIVKVATTKAQRKLFFNLRKAKQRLGWFNQDEVEMVARELGVTSKDVREMESRMAAQDM 180

Query: 181 AFEMSAEDDENGMAYTAPVLYLEDKHSDLADNLEAENWEAHTTQRLSMALASLDERSQHI 240
            F+MS++DD +     APVLYL+DK S+ AD +E +NWE     +L+ A+  LDER Q I
Sbjct: 181 TFDMSSDDDASDSQPMAPVLYLQDKTSNFADGIEEDNWEDQAANKLTHAMEGLDERCQDI 240

Query: 241 VRARWLDDDNKTTLQDLAEMYGVSAERIRQLEKNAMRKLKEAV 283
           +RARWLD+DNK+TLQ+LA+ YGVSAER+RQLEKNAM+KL+ A+
Sbjct: 241 IRARWLDEDNKSTLQELADRYGVSAERVRQLEKNAMKKLRAAI 283