Pairwise Alignments

Query, 286 a.a., RNA polymerase sigma factor RpoH from Vibrio cholerae E7946 ATCC 55056

Subject, 613 a.a., RNA polymerase sigma factor RpoD from Escherichia coli ECRC62

 Score = 92.4 bits (228), Expect = 2e-23
 Identities = 72/241 (29%), Positives = 119/241 (49%), Gaps = 25/241 (10%)

Query: 49  AAKGLILSHLRFVVHVARGYSGYGLPMADLVQEGNIGLMKAVKRFNPEMGVRLVSFAVHW 108
           A K ++ ++LR V+ +A+ Y+  GL   DL+QEGNIGLMKAV +F    G +  ++A  W
Sbjct: 375 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 434

Query: 109 IKAEIHEYVLRNWRIVKIATTKAQRKLFFNLRKSKKRLGWFNNGEVETVARELGVEPAEV 168
           I+  I   +    R ++I     +     N R S++ L            +E+G EP   
Sbjct: 435 IRQAITRSIADQARTIRIPVHMIETINKLN-RISRQML------------QEMGREPTP- 480

Query: 169 REMESRLAAQDAAFEMSAEDDENGMAYTAPVLYLEDKHSDLADNLEAENWE----AHTTQ 224
            E+  R+   +       +  +  ++   P+   ED H  L D +E    E    + TT+
Sbjct: 481 EELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSH--LGDFIEDTTLELPLDSATTE 538

Query: 225 RLSMA----LASLDERSQHIVRARW-LDDDNKTTLQDLAEMYGVSAERIRQLEKNAMRKL 279
            L  A    LA L  R   ++R R+ +D +   TL+++ + + V+ ERIRQ+E  A+RKL
Sbjct: 539 SLRAATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKL 598

Query: 280 K 280
           +
Sbjct: 599 R 599