Pairwise Alignments

Query, 286 a.a., RNA polymerase sigma factor RpoH from Vibrio cholerae E7946 ATCC 55056

Subject, 285 a.a., RNA polymerase sigma factor RpoH from Dickeya dianthicola ME23

 Score =  424 bits (1090), Expect = e-123
 Identities = 208/283 (73%), Positives = 237/283 (83%)

Query: 1   MTNQAYPMALVSQDSLDSYIRSVNGYPMLSADEERELAERLHYKGDIDAAKGLILSHLRF 60
           MT      ALV Q SL+ YIR+ N YPML+A+EER LAERLHY GD+DAAK LILSHLRF
Sbjct: 1   MTKDMQTFALVPQGSLEGYIRAANAYPMLTAEEERALAERLHYHGDLDAAKQLILSHLRF 60

Query: 61  VVHVARGYSGYGLPMADLVQEGNIGLMKAVKRFNPEMGVRLVSFAVHWIKAEIHEYVLRN 120
           V+HVAR YSGYGLP ADL+QEGNIGLMKAV+RFNP++GVRLVSFAVHWIKAEIHEYVLRN
Sbjct: 61  VIHVARNYSGYGLPQADLIQEGNIGLMKAVRRFNPDVGVRLVSFAVHWIKAEIHEYVLRN 120

Query: 121 WRIVKIATTKAQRKLFFNLRKSKKRLGWFNNGEVETVARELGVEPAEVREMESRLAAQDA 180
           WRIVK+ATTKAQRKLFFNLRK+K+RLGWFN  EVE VARELGV   +VREMESR+AAQD 
Sbjct: 121 WRIVKVATTKAQRKLFFNLRKTKQRLGWFNQDEVELVARELGVTSKDVREMESRMAAQDM 180

Query: 181 AFEMSAEDDENGMAYTAPVLYLEDKHSDLADNLEAENWEAHTTQRLSMALASLDERSQHI 240
            F+ S EDD       AP+LYL+DK SD AD +E +NWE H   +L+ AL  LDERSQHI
Sbjct: 181 TFDPSPEDDAQPGQPMAPMLYLQDKSSDFADGIEEDNWETHAADKLTYALEGLDERSQHI 240

Query: 241 VRARWLDDDNKTTLQDLAEMYGVSAERIRQLEKNAMRKLKEAV 283
           +RARWLDDDNK+TLQ+LA+ YGVSAERIRQLEKNAM+KL+ A+
Sbjct: 241 IRARWLDDDNKSTLQELADHYGVSAERIRQLEKNAMKKLRVAI 283