Pairwise Alignments

Query, 286 a.a., RNA polymerase sigma factor RpoH from Vibrio cholerae E7946 ATCC 55056

Subject, 287 a.a., RNA polymerase sigma factor, sigma-70 family from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  113 bits (282), Expect = 6e-30
 Identities = 77/270 (28%), Positives = 142/270 (52%), Gaps = 16/270 (5%)

Query: 15  SLDSYIRSVNGYPMLSADEERELAERLHYKGDIDAAKGLILSHLRFVVHVARGYSGYGLP 74
           SLD Y++ +    +L+ADEE  LA+R+  +GD  A + L  ++LRFVV VA+ Y   GL 
Sbjct: 17  SLDKYLQEIGKVDLLTADEEVVLAKRIR-EGDQLALEKLTKANLRFVVSVAKQYQNQGLS 75

Query: 75  MADLVQEGNIGLMKAVKRFNPEMGVRLVSFAVHWIKAEIHEYVLRNWRIVKIATTKAQRK 134
           + DL+ EGN+GL+KA +RF+   G + +S+AV WI+  I + +    RIV++   +    
Sbjct: 76  LGDLINEGNLGLIKAAQRFDETRGFKFISYAVWWIRQSILQALAEQSRIVRLPLNRVGSL 135

Query: 135 LFFNLRKSKKRLGWFNNGEVETVARELGVEPAEV---REMESRLAAQDAAFEMSAEDDEN 191
              +   S+    +      E +A  L V   EV    ++  R  + DA F    + +EN
Sbjct: 136 NKISKTFSELEQRFEREPSPEELAEVLEVTAGEVVDTMKISGRHVSMDAPF---VQGEEN 192

Query: 192 GMAYTAPVLYLEDKHSDLADNLEAENWEAHTTQRLSMALASLDERSQHIVRARW-LDDDN 250
            +        L+   +D  +  +         + +  AL++L +R   ++   + L+ ++
Sbjct: 193 SL--------LDVLENDGEEKPDDGLMNDSLRKEVQRALSTLTQREADVITLYFGLNGEH 244

Query: 251 KTTLQDLAEMYGVSAERIRQLEKNAMRKLK 280
             TL+++ E + ++ ER+RQ+++ A+R+L+
Sbjct: 245 AMTLEEIGEKFNLTRERVRQIKEKAIRRLR 274