Pairwise Alignments

Query, 286 a.a., RNA polymerase sigma factor RpoH from Vibrio cholerae E7946 ATCC 55056

Subject, 295 a.a., RNA polymerase sigma factor RpoH from Brevundimonas sp. GW460-12-10-14-LB2

 Score =  196 bits (497), Expect = 7e-55
 Identities = 113/280 (40%), Positives = 168/280 (60%), Gaps = 18/280 (6%)

Query: 13  QDSLDSYIRSVNGYPMLSADEERELAERLHYKGDIDAAKGLILSHLRFVVHVARGYSGYG 72
           +  L  Y+  +  +PML+ DEE  LA+R     D +AA  L+ SHLR V  +A GY GYG
Sbjct: 13  EQGLSRYLTEIRKFPMLTKDEEFMLAKRWSEHQDPEAAHRLVTSHLRLVAKIAMGYRGYG 72

Query: 73  LPMADLVQEGNIGLMKAVKRFNPEMGVRLVSFAVHWIKAEIHEYVLRNWRIVKIATTKAQ 132
           LP+ +++ EGN+GLM+AVK+F+ + G RL ++A+ WI+A I EY+LR+W +VK+ TT AQ
Sbjct: 73  LPIGEVISEGNVGLMQAVKKFDADKGFRLATYAMWWIRASIQEYILRSWSLVKMGTTAAQ 132

Query: 133 RKLFFNLRKSKKRLGWFNNGEVE-----TVARELGVEPAEVREMESRL---AAQDAAFEM 184
           +KLFFNLRK+K ++  F  G++       +A +LGV   EV  M  RL   A+ +A    
Sbjct: 133 KKLFFNLRKAKSQISAFEEGDLHPEHLAAIATKLGVTEEEVTNMNRRLGGDASLNAPLRA 192

Query: 185 SAEDD-ENGMAYTAPVLYLEDKHSDLADNLEAENWEAHTTQRLSMALASLDERSQHIVRA 243
             E + ++ +A    V     + + LAD+ E    +      L  A+  L +R +HI+  
Sbjct: 193 DGESEWQDWLADDTAV----SQETQLADDEE----KGIRMSLLQEAMEELTDREKHILTE 244

Query: 244 RWLDDDNKTTLQDLAEMYGVSAERIRQLEKNAMRKLKEAV 283
           R L DD   TL++LA  YGVS ER+RQ+E  A  KL++A+
Sbjct: 245 RRLKDD-PVTLEELAGQYGVSRERVRQIEVRAFEKLQKAM 283