Pairwise Alignments

Query, 286 a.a., RNA polymerase sigma factor RpoH from Vibrio cholerae E7946 ATCC 55056

Subject, 284 a.a., RNA polymerase, sigma 32 (sigma H) factor from Escherichia coli BL21

 Score =  412 bits (1059), Expect = e-120
 Identities = 201/283 (71%), Positives = 240/283 (84%), Gaps = 1/283 (0%)

Query: 1   MTNQAYPMALVSQDSLDSYIRSVNGYPMLSADEERELAERLHYKGDIDAAKGLILSHLRF 60
           MT++   +AL    +LDSYIR+ N +PMLSADEER LAE+LHY GD++AAK LILSHLRF
Sbjct: 1   MTDKMQSLALAPVGNLDSYIRAANAWPMLSADEERALAEKLHYHGDLEAAKTLILSHLRF 60

Query: 61  VVHVARGYSGYGLPMADLVQEGNIGLMKAVKRFNPEMGVRLVSFAVHWIKAEIHEYVLRN 120
           VVH+AR Y+GYGLP ADL+QEGNIGLMKAV+RFNPE+GVRLVSFAVHWIKAEIHEYVLRN
Sbjct: 61  VVHIARNYAGYGLPQADLIQEGNIGLMKAVRRFNPEVGVRLVSFAVHWIKAEIHEYVLRN 120

Query: 121 WRIVKIATTKAQRKLFFNLRKSKKRLGWFNNGEVETVARELGVEPAEVREMESRLAAQDA 180
           WRIVK+ATTKAQRKLFFNLRK+K+RLGWFN  EVE VARELGV   +VREMESR+AAQD 
Sbjct: 121 WRIVKVATTKAQRKLFFNLRKTKQRLGWFNQDEVEMVARELGVTSKDVREMESRMAAQDM 180

Query: 181 AFEMSAEDDENGMAYTAPVLYLEDKHSDLADNLEAENWEAHTTQRLSMALASLDERSQHI 240
            F++S++DD +     APVLYL+DK S+ AD +E +NWE     RL+ A+  LDERSQ I
Sbjct: 181 TFDLSSDDDSDSQP-MAPVLYLQDKSSNFADGIEDDNWEEQAANRLTDAMQGLDERSQDI 239

Query: 241 VRARWLDDDNKTTLQDLAEMYGVSAERIRQLEKNAMRKLKEAV 283
           +RARWLD+DNK+TLQ+LA+ YGVSAER+RQLEKNAM+KL+ A+
Sbjct: 240 IRARWLDEDNKSTLQELADRYGVSAERVRQLEKNAMKKLRAAI 282