Pairwise Alignments

Query, 286 a.a., RNA polymerase sigma factor RpoH from Vibrio cholerae E7946 ATCC 55056

Subject, 330 a.a., RNA polymerase, sigma S (sigma 38) factor from Escherichia coli BL21

 Score =  101 bits (252), Expect = 2e-26
 Identities = 77/288 (26%), Positives = 134/288 (46%), Gaps = 48/288 (16%)

Query: 14  DSLDSYIRSVNGYPMLSADEERELAERLHYKGDIDAAKGLILSHLRFVVHVARGYSGYGL 73
           D+   Y+  +   P+L+A+EE   A R   +GD+ + + +I S+LR VV +AR Y   GL
Sbjct: 56  DATQLYLGEIGYSPLLTAEEEVYFARRA-LRGDVASRRRMIESNLRLVVKIARRYGNRGL 114

Query: 74  PMADLVQEGNIGLMKAVKRFNPEMGVRLVSFAVHWIKAEIHEYVLRNWRIVKIATTKAQR 133
            + DL++EGN+GL++AV++F+PE G R  ++A  WI+  I   ++   R +++       
Sbjct: 115 ALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPI----- 169

Query: 134 KLFFNLRKSKKRLGWFNNGEVETVARELGVEPAEVREMESRLAAQDAAFEMSAEDDE--- 190
                                  + +EL V     RE+  +L  + +A E++ + D+   
Sbjct: 170 ----------------------HIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVD 207

Query: 191 --------NGMAYTAPVLYLEDKHSDLADNL--EAENWEAHTTQRLSMA------LASLD 234
                   N    +       D    L D L  E EN    TTQ   M       L  L+
Sbjct: 208 DVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELN 267

Query: 235 ERSQHIVRARW-LDDDNKTTLQDLAEMYGVSAERIRQLEKNAMRKLKE 281
            + + ++  R+ L      TL+D+    G++ ER+RQ++   +R+L+E
Sbjct: 268 AKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLRE 315