Pairwise Alignments

Query, 286 a.a., RNA polymerase sigma factor RpoH from Vibrio cholerae E7946 ATCC 55056

Subject, 284 a.a., Heat shock regulatory protein F33.4 from Alteromonas macleodii MIT1002

 Score =  350 bits (897), Expect = e-101
 Identities = 178/285 (62%), Positives = 226/285 (79%), Gaps = 5/285 (1%)

Query: 1   MTNQAYPMALV--SQDSLDSYIRSVNGYPMLSADEERELAERLHYKGDIDAAKGLILSHL 58
           M+N    MAL      S++ YI++V+   MLSA+EERELA RL    D+ AA+ L++SHL
Sbjct: 1   MSNNLQSMALSVPHSGSIEGYIQAVSSIDMLSAEEERELAVRLREDEDLQAARKLVMSHL 60

Query: 59  RFVVHVARGYSGYGLPMADLVQEGNIGLMKAVKRFNPEMGVRLVSFAVHWIKAEIHEYVL 118
           RFVVH+A+ YSGYGLP ADL+QEGNIGLMKAVKRF+P +GVRLVSFAVHWIKAEIHE+VL
Sbjct: 61  RFVVHIAKSYSGYGLPQADLIQEGNIGLMKAVKRFDPTVGVRLVSFAVHWIKAEIHEFVL 120

Query: 119 RNWRIVKIATTKAQRKLFFNLRKSKKRLGWFNNGEVETVARELGVEPAEVREMESRLAAQ 178
           +NWRIVK+ATTKAQRKLFFNLRK+KKRLGWF + EV+TVA ELGV   EV +ME+R+++Q
Sbjct: 121 KNWRIVKVATTKAQRKLFFNLRKAKKRLGWFTHDEVQTVANELGVSTKEVLQMEARMSSQ 180

Query: 179 DAAFEMSAEDDENGMAYTAPVLYLEDKHSDLADNLEAENWEAHTTQRLSMALASLDERSQ 238
           D AF+++A++DE G    APV YLEDK SD+  ++   +W+   ++RL  A+ +LDERSQ
Sbjct: 181 DQAFDLTADEDETG--NFAPVQYLEDKSSDVETDVINNDWDTAASKRLYSAIKTLDERSQ 238

Query: 239 HIVRARWLDDDNKTTLQDLAEMYGVSAERIRQLEKNAMRKLKEAV 283
            I+  RWL  DNK TLQDLA+ Y VSAER+RQ+EKNAM+KL+ A+
Sbjct: 239 DIIETRWL-ADNKITLQDLADKYQVSAERVRQIEKNAMKKLQAAM 282