Pairwise Alignments

Query, 286 a.a., RNA polymerase sigma factor RpoH from Vibrio cholerae E7946 ATCC 55056

Subject, 330 a.a., RNA polymerase sigma factor RpoS from Alteromonas macleodii MIT1002

 Score =  102 bits (253), Expect = 1e-26
 Identities = 74/276 (26%), Positives = 146/276 (52%), Gaps = 18/276 (6%)

Query: 14  DSLDSYIRSVNGYPMLSADEERELAERLHYKGDIDAAKGLILSHLRFVVHVARGYSGYGL 73
           D+   Y+  +   P+L+A+EE   A R   KG   + K +I+S+LR VV +AR Y+  GL
Sbjct: 54  DATQLYLGEIGFSPLLTAEEEVYFARR-SLKGCEASRKRMIVSNLRLVVKIARRYNNRGL 112

Query: 74  PMADLVQEGNIGLMKAVKRFNPEMGVRLVSFAVHWIKAEIHEYVLRNWRIVKIATTKAQR 133
            + DL++EGN+GL++AV++F+PE G R  ++A  WI+  I   ++   R +++      +
Sbjct: 113 ALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRL-PIHVVK 171

Query: 134 KLFFNLRKSK---KRLGWFNNGEVETVARELGVEP-AEVREMESRLAAQDAAFEMSAEDD 189
           +L   LR S+   ++L      E   +A +  VE   ++  +  R+ + D    +  E+D
Sbjct: 172 ELNVYLRASRELSQKLDHEPTAEEIALALDKPVEDVTKMLRLNERITSVDT--PIGGEND 229

Query: 190 ENGMAYTAPVLYLEDKHSDLADNLEAENWEAHTTQRLSMALASLDERSQHIVRARW-LDD 248
           +  +   A     ++K     ++L+    ++     +   L  L+ + + ++  R+ L  
Sbjct: 230 KALLDIIA-----DEKEFSPEESLQ----DSDIKSNIVTWLEELNPKQREVLARRFGLMG 280

Query: 249 DNKTTLQDLAEMYGVSAERIRQLEKNAMRKLKEAVG 284
              +TL+D+    G++ ER+RQ++  A+R+L++ +G
Sbjct: 281 YEPSTLEDVGAEIGLTRERVRQIQVEALRRLRDMLG 316