Pairwise Alignments

Query, 286 a.a., RNA polymerase sigma factor RpoH from Vibrio cholerae E7946 ATCC 55056

Subject, 300 a.a., RNA polymerase sigma-32 factor from Agrobacterium fabrum C58

 Score =  194 bits (492), Expect = 3e-54
 Identities = 116/291 (39%), Positives = 172/291 (59%), Gaps = 15/291 (5%)

Query: 1   MTNQAYPMALVSQDSLDSYIRSVNGYPMLSADEERELAERLHYKGDIDAAKGLILSHLRF 60
           M   + P     +  L+ Y+  +  +PML   EE  L +R    GD DAA  L+ SHLR 
Sbjct: 1   MARNSLPTITAGEAGLNRYLDEIRKFPMLEPQEEYMLGKRYAEHGDRDAAHKLVTSHLRL 60

Query: 61  VVHVARGYSGYGLPMADLVQEGNIGLMKAVKRFNPEMGVRLVSFAVHWIKAEIHEYVLRN 120
           V  +A GY GYGLP+ ++V EGN+GLM+AVK+F+PE G RL ++A+ WIKA I EY+LR+
Sbjct: 61  VAKIAMGYRGYGLPIGEVVSEGNVGLMQAVKKFDPERGFRLATYAMWWIKASIQEYILRS 120

Query: 121 WRIVKIATTKAQRKLFFNLRKSKKRLGWFNNGE-----VETVARELGVEPAEVREMESRL 175
           W +VK+ TT  Q++LFFNLR+ K R+   ++G+     V+ +A +L V   EV  M  RL
Sbjct: 121 WSLVKMGTTANQKRLFFNLRRLKGRIQAIDDGDLKPEHVKEIATKLQVSEEEVISMNRRL 180

Query: 176 AAQDAAFE--MSAEDDENGMAYTAPVLYLEDKHSDLADNLEAENWEAHTTQR-LSMALAS 232
              DA+    + A + E+G        +L D H +  + +  E  E  T +R L+ A+  
Sbjct: 181 HG-DASLNAPIKASEGESGQWQD----WLVDDH-ESQEAVLIEQDELETRRRMLAKAMGV 234

Query: 233 LDERSQHIVRARWLDDDNKTTLQDLAEMYGVSAERIRQLEKNAMRKLKEAV 283
           L+ER + I  AR L +D   TL++L+  + +S ER+RQ+E  A  K++EAV
Sbjct: 235 LNERERRIFEARRLAED-PVTLEELSSEFDISRERVRQIEVRAFEKVQEAV 284