Pairwise Alignments

Query, 286 a.a., RNA polymerase sigma factor RpoH from Vibrio cholerae E7946 ATCC 55056

Subject, 289 a.a., RNA polymerase sigma factor RpoH from Acinetobacter radioresistens SK82

 Score =  335 bits (860), Expect = 5e-97
 Identities = 171/283 (60%), Positives = 215/283 (75%), Gaps = 2/283 (0%)

Query: 2   TNQAYPMALVSQD-SLDSYIRSVNGYPMLSADEERELAERLHYKGDIDAAKGLILSHLRF 60
           +NQ  P++L +   +L +YI +VN  P+L+A++E+ELAER +Y  D+DAAK L++SHLRF
Sbjct: 5   SNQLMPLSLSAPGVNLGAYISTVNQIPILTAEQEKELAERYYYDQDLDAAKMLVMSHLRF 64

Query: 61  VVHVARGYSGYGLPMADLVQEGNIGLMKAVKRFNPEMGVRLVSFAVHWIKAEIHEYVLRN 120
           VVH+AR Y+GYGLP  DL+QEGN+GLMKAVKRF+P MGVRLVSFAVHWIKAEIHEYV+RN
Sbjct: 65  VVHIARSYAGYGLPQGDLIQEGNLGLMKAVKRFDPSMGVRLVSFAVHWIKAEIHEYVIRN 124

Query: 121 WRIVKIATTKAQRKLFFNLRKSKKRLGWFNNGEVETVARELGVEPAEVREMESRLAAQDA 180
           WRIVKIATTKAQRKLFFNLR  KK        E  ++A +L V P +V EME RL A DA
Sbjct: 125 WRIVKIATTKAQRKLFFNLRSLKKSSKKLTLEEARSIANDLNVTPEQVLEMEGRLTAYDA 184

Query: 181 AFEMSAEDDENGMAYTAPVLYLEDKHSDLADNLEAENWEAHTTQRLSMALASLDERSQHI 240
           AFE   +DD++  ++ APVLYLED   D A  +E E+WE  +   L  A+  LD+RS++I
Sbjct: 185 AFEAQGDDDDDSSSHVAPVLYLEDSRYDPARLVEDEDWEEQSNSALHNAMDQLDDRSRNI 244

Query: 241 VRARWLDDDNKTTLQDLAEMYGVSAERIRQLEKNAMRKLKEAV 283
           ++ RWLDDD K+TL +LA  Y VSAERIRQLEKNAM K+K A+
Sbjct: 245 LQRRWLDDD-KSTLHELAAEYNVSAERIRQLEKNAMEKIKVAM 286