Pairwise Alignments

Query, 199 a.a., 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD from Vibrio cholerae E7946 ATCC 55056

Subject, 202 a.a., 16S rRNA methyltransferase from Pseudomonas simiae WCS417

 Score =  157 bits (397), Expect = 1e-43
 Identities = 87/181 (48%), Positives = 107/181 (59%), Gaps = 1/181 (0%)

Query: 17  GQVRIISGLWRGRKLPVHDAEGLRPTTDRVKETLFNWLAQEVPNARCLDLFAGSGGLGFE 76
           GQ+RII G WR RKL   D  GLRPT DRV+ETLFNWLA  +  A+ LD FAGSG L  E
Sbjct: 19  GQLRIIGGEWRSRKLSFPDVVGLRPTPDRVRETLFNWLAPYIAGAKVLDPFAGSGALFLE 78

Query: 77  CASRQANQVTMLELNPLAFQQLKTNVQSLKAENIELIHTDALAFLR-QSGKPYDVVFIDP 135
             SR A     L+ + +A   LK ++ +L+    ++   DAL +L  Q    YDVVF+DP
Sbjct: 79  ALSRGAALGQALDASNVAVSSLKEHLGTLRCTTGQVQTADALRYLETQPASEYDVVFLDP 138

Query: 136 PFRQGLLQETTQLLEQNGWLAPQAMIYIECEKELPLTELPPHWHLHREKSAGQVCYRLFI 195
           PF Q LL     LLE+  WLAP A IY E E       LP  W LHRE+ +G+V Y L+ 
Sbjct: 139 PFNQNLLPTVCALLEERQWLAPDAWIYTESETAPSTLGLPAAWRLHREQKSGRVYYALWH 198

Query: 196 R 196
           R
Sbjct: 199 R 199