Pairwise Alignments

Query, 199 a.a., 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD from Vibrio cholerae E7946 ATCC 55056

Subject, 204 a.a., Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  120 bits (302), Expect = 1e-32
 Identities = 72/180 (40%), Positives = 97/180 (53%), Gaps = 4/180 (2%)

Query: 18  QVRIISGLWRGRKLPVHDAEGLRPTTDRVKETLFNWLAQEVPNARCLDLFAGSGGLGFEC 77
           +VRII G W+  KLPV D  GLRPT  RV+ETLFNWL Q++   RC+D FAG+G LG E 
Sbjct: 18  EVRIIGGQWKRTKLPVADRPGLRPTPSRVRETLFNWLGQDLSGWRCIDAFAGTGALGLEA 77

Query: 78  ASRQANQVTMLELNPLAFQQLKTNVQSLKAENIELIHTDALAFLRQ-SGKPYDVVFIDPP 136
           ASR A +V ++E +      L      LKA  + +   D +A LRQ +G+  D VF+DPP
Sbjct: 78  ASRGAVEVVLVEQDSALLANLGRITTQLKATGVRVERGDGVAALRQRAGQGLDAVFLDPP 137

Query: 137 FRQGLLQE--TTQLLEQNGWLAPQAMIYIECEKELPLTELPP-HWHLHREKSAGQVCYRL 193
           F  G  +      L      +    +IY+E  +     EL      +HR+  AG V + L
Sbjct: 138 FGDGQNEALYAAALAAARQAVRGDGLIYLEAPRVWSEDELAQIGLQVHRQGKAGAVAFHL 197