Pairwise Alignments

Query, 199 a.a., 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD from Vibrio cholerae E7946 ATCC 55056

Subject, 376 a.a., 23S rRNA (Uracil-5-) -methyltransferase rumB (EC 2.1.1.-) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score = 55.8 bits (133), Expect = 9e-13
 Identities = 40/140 (28%), Positives = 67/140 (47%), Gaps = 8/140 (5%)

Query: 45  RVKETLFNWLAQEVPNARCLDLFAGSGGLGFECASRQANQVTMLELNPLAFQQLKTNVQS 104
           R+  T  +W+ Q +P     DLF G GG G  CA+ Q  Q+T +E+ P A    K +   
Sbjct: 220 RLYATARDWVGQ-LPVRHMWDLFCGVGGFGLHCATPQM-QLTGIEIAPEAIACAKQSAAE 277

Query: 105 LKAENIELIHTDALAFLRQSGKPYDVVFIDPPFRQGLLQETTQLLEQNGWLAPQAMIYIE 164
           L    +     D+  F    G+  D+V ++PP R+G+ +     L Q   +AP+ +IY  
Sbjct: 278 LGLTRLHFQALDSTQFATAQGETPDLVLVNPP-RRGIGKPLCDYLAQ---MAPRFIIYSS 333

Query: 165 CEKELPLTELP--PHWHLHR 182
           C  +    ++   P++ + R
Sbjct: 334 CNAQTMAQDIRHLPNYRIQR 353