Pairwise Alignments

Query, 199 a.a., 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD from Vibrio cholerae E7946 ATCC 55056

Subject, 231 a.a., Ribosomal RNA small subunit methyltransferase D from Alteromonas macleodii MIT1002

 Score =  170 bits (431), Expect = 2e-47
 Identities = 91/196 (46%), Positives = 121/196 (61%), Gaps = 4/196 (2%)

Query: 2   QRRRQPNPSQKKAPTGQVRIISGLWRGRKLPVHDAEGLRPTTDRVKETLFNWLAQEVPNA 61
           Q+ ++   +Q     GQ+RII G WRGRKLPV +AEGLRPTTDR KETLFNWL   + +A
Sbjct: 32  QKGKKSRKTQSTNSPGQIRIIGGQWRGRKLPVLNAEGLRPTTDRNKETLFNWLMPYINDA 91

Query: 62  RCLDLFAGSGGLGFECASRQANQVTMLELNPLAFQQLKTNVQSLKAENI--ELIHT-DAL 118
           RCLD+FAGSGGLG E  SR A     +EL+  A  QLK+N+  LKA  +    +H  DAL
Sbjct: 92  RCLDVFAGSGGLGLEALSRYAAHCDFIELDKQAASQLKSNLTLLKANELASATVHQGDAL 151

Query: 119 AFLRQ-SGKPYDVVFIDPPFRQGLLQETTQLLEQNGWLAPQAMIYIECEKELPLTELPPH 177
             L+  S  PYD++F+DPPF + L+  T   LE N  +   +++Y+E E  L    LP H
Sbjct: 152 GILKGISQAPYDIIFVDPPFAKSLVAPTLAALEDNKLVHSGSVVYLEHESALTTPALPAH 211

Query: 178 WHLHREKSAGQVCYRL 193
           W + ++K    + Y L
Sbjct: 212 WQIIKDKQTSALRYML 227