Pairwise Alignments

Query, 199 a.a., 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD from Vibrio cholerae E7946 ATCC 55056

Subject, 183 a.a., Ribosomal RNA small subunit methyltransferase D from Acinetobacter radioresistens SK82

 Score =  146 bits (368), Expect = 3e-40
 Identities = 81/182 (44%), Positives = 109/182 (59%), Gaps = 2/182 (1%)

Query: 18  QVRIISGLWRGRKLPVHDAEGLRPTTDRVKETLFNWLAQEVPNARCLDLFAGSGGLGFEC 77
           Q+RII G W+ R+LP    EGLRPT DRV+ETLFNWL  E+ NA  LD+ AGSG L FE 
Sbjct: 4   QLRIIGGEWKRRQLPFASIEGLRPTPDRVRETLFNWLMWEIQNAHILDICAGSGALAFEA 63

Query: 78  ASRQANQVTMLELNPLAFQQLKTNVQSLKAENIELIHTDALAFLRQSGKPYDVVFIDPPF 137
            SR A  V M+E N +    L+ N Q LKAEN +L    A   L    + +DVVF+DPP+
Sbjct: 64  LSRGAASVVMIEPNTIQASFLQQNRQLLKAENSQLKIATAQQVLPTLQQSFDVVFLDPPY 123

Query: 138 RQGLLQETTQLLEQNGWLAPQAMIYIECEKELPLTELPPHWHLHREKSAGQVCYRLFIRE 197
              L QE  +L +    +  QA IY+E ++EL   +LP +W L ++  AG V   L+ ++
Sbjct: 124 SLDLWQELAELADP--LIKDQAYIYVEADRELQWLQLPANWQLLKQTKAGTVRAGLYQKQ 181

Query: 198 EQ 199
            +
Sbjct: 182 SK 183