Pairwise Alignments

Query, 205 a.a., homoserine/homoserine lactone efflux protein from Vibrio cholerae E7946 ATCC 55056

Subject, 212 a.a., neutral amino-acid efflux system (NCBI) from Escherichia coli BW25113

 Score = 92.8 bits (229), Expect = 4e-24
 Identities = 60/206 (29%), Positives = 106/206 (51%), Gaps = 4/206 (1%)

Query: 3   IHVWLAYLLTAVVFSLAPGSGTVNSISNGLSYGTRHSLGAIIGLQIGLACHIVLVGIGIG 62
           ++ W  YL+ A+   L PG  T+  + N +S G +    A  G+ IG A  + L   G+ 
Sbjct: 8   LNYW-TYLVGAIFIVLVPGPNTLFVLKNSVSSGMKGGYLAACGVFIGDAVLMFLAWAGVA 66

Query: 63  ALVAQSALAFTLIKWIGAAYLVWLGIQ-KWRDRAPLTATTTSHELSQAALLRKAVLINLT 121
            L+  + + F +++++GA YL++LG +  +       +   S E    A+ ++A++++LT
Sbjct: 67  TLIKTTPILFNIVRYLGAFYLLYLGSKILYATLKGKNSEAKSDEPQYGAIFKRALILSLT 126

Query: 122 NPKSIVFLVALFPQFIDPTRDHWP-QFLVLGITTVTIDAIVMFGYTALAAQLGRYIRSPN 180
           NPK+I+F V+ F QFID    H    F +L  T   +    +       A + +YIR+  
Sbjct: 127 NPKAILFYVSFFVQFIDVNAPHTGISFFILAATLELVSFCYLSFLIISGAFVTQYIRTKK 186

Query: 181 IMTRM-NKLFGSMFMGCGMLLATAKA 205
            + ++ N L G MF+G    LAT ++
Sbjct: 187 KLAKVGNSLIGLMFVGFAARLATLQS 212