Pairwise Alignments

Query, 276 a.a., diaminopimelate epimerase from Vibrio cholerae E7946 ATCC 55056

Subject, 294 a.a., Diaminopimelate epimerase (EC 5.1.1.7) from Variovorax sp. SCN45

 Score =  260 bits (665), Expect = 2e-74
 Identities = 142/285 (49%), Positives = 172/285 (60%), Gaps = 11/285 (3%)

Query: 1   MHFHFSKMHGLGNDFMVVDCITQNVFFSPELIRRLADRHTGVGFDQLLVVEAPYDPESDF 60
           M   F+KM G GNDF+V+D     +  S    R LADRH GVG DQ+L V        DF
Sbjct: 1   MRIRFTKMQGAGNDFVVLDETRGTLGLSAAQYRFLADRHFGVGADQILTVRPSPAEGVDF 60

Query: 61  HYRIFNADGSEVEQCGNGARCFARFVRMKGLTNKYTIHVSTKKGKMVLNVEEEDLITVNM 120
            Y I NADG EVEQCGNGARCF RFV    LT+K  + V T  G +   +  +  +TV+M
Sbjct: 61  QYVIHNADGGEVEQCGNGARCFMRFVSEHKLTDKTEVRVQTLAGVIAPRMGADGRVTVDM 120

Query: 121 GVPEFEPNKIPFRAK----QSEKTYI-------LRVGEHTLFCGAVSMGNPHVVTVVDDI 169
           G P FE  ++PF       Q E  +         R G   +    +SMGNPH V VVD++
Sbjct: 121 GAPVFETERVPFDTAGLDPQPEGAWQKWHLALGTRAGSAIVSVAVLSMGNPHAVQVVDNV 180

Query: 170 RTAAVETLGPLLESHERFPERVNAGFMQVVSRDEINLRVYERGAGETQACGSGACAAVAV 229
            TA V   GP +E H RFP+RVNAGFMQVV R  I LRV+ERGAGET ACG+GACAAV  
Sbjct: 181 DTAPVAEQGPQIEHHPRFPQRVNAGFMQVVDRTHIKLRVFERGAGETLACGTGACAAVVA 240

Query: 230 GILQGLLDEQVRVHLPGGELEIHWQGPGKPLYMTGPATHIYDGQI 274
           GI  GLL+ +V V   GG L I WQG G+P+ MTGPAT +++G I
Sbjct: 241 GIRLGLLERRVDVQTHGGVLTIEWQGEGQPVLMTGPATTVFEGDI 285