Pairwise Alignments

Query, 417 a.a., diaminopimelate decarboxylase from Vibrio cholerae E7946 ATCC 55056

Subject, 440 a.a., type III PLP-dependent enzyme from Dickeya dadantii 3937

 Score =  193 bits (491), Expect = 7e-54
 Identities = 138/425 (32%), Positives = 211/425 (49%), Gaps = 29/425 (6%)

Query: 8   EDGQLWA----EQVPLADLANQYGTPLYVYSRATLERHWHAFDKSVGDYPHLICYAVKAN 63
           E G L+A    E++P+A++A++ GTP YVYS   L R      + +      I Y++KAN
Sbjct: 11  EAGSLFANGYVEEIPVANIADRIGTPFYVYSARQLRRQLQQLRQQLPTGT-AIYYSLKAN 69

Query: 64  SNLGVLNTLARLGSGFDIVSVGELERVLAAGGDPSKVVFSGVGKTEAEMKRALQLKIKCF 123
            NL V+  LA  G+G ++ S  EL+  LAAG  P  +++ G GK+   +K A+   I+  
Sbjct: 70  PNLSVVRALAEQGAGCEVCSPAELKTALAAGVSPQHILYVGPGKSLPALKLAIDCGIRAI 129

Query: 124 NVESEPELQRLNKVAGELGVKAPISLRINPDVDAKTHPYISTGLRDNKFGITFDRAAQVY 183
            VES  EL  LN++A        ++LRINPD  +     + +G +  +FG+  D    V 
Sbjct: 130 VVESVTELDNLNRLAARANTVQTVALRINPDFSSAHARLVMSG-KPTQFGMMRDTLHTVL 188

Query: 184 RLAHSLPNLDVHGIDCHIGSQLTALAPFIDATDRLLAL-IDSLKAEGIHIRHLDVGGGLG 242
              H  P++ + G   ++G+++       D T  +L L +D      + +  +DVGGG G
Sbjct: 189 ASLHRWPSISLRGFHVYLGTRILNAQAIADNTRNILQLALDLRDTHRLTLDFVDVGGGFG 248

Query: 243 VVYRD-----ELPPQPSEYAKALLDRLERHRDLELIFEPGRAIAANAGVLVTKVEFLKHT 297
           V Y       +LP   +  A  + D   R  D ++I E GR + A AG+ VT+V  LK  
Sbjct: 249 VPYFPKETPLDLPALGAAIASIVADFRRRAADTQIIIELGRYLVAEAGLFVTRVNTLKTA 308

Query: 298 EHKNFAIID---------AAMNDLIRPALYQAWQDIIPLRPRQGE-AQTYDLVGPVCETS 347
             K FA+ D         A +N ++R         ++ L   QG   Q Y + GP+C  +
Sbjct: 309 GGKTFAVCDGGANCHSAAAGLNSMLRKNF-----PLLRLGDNQGRPLQPYQVSGPLCTPT 363

Query: 348 DFLGKDRDL-VLQEGDLLAVRSSGAYGFTMS-SNYNTRPRVAEVMVDGNKTYLVRQREEL 405
           D LG +  L  L+  DL+ +  SGAYG T S  ++ +     EVMVDG +  L+RQ E  
Sbjct: 364 DLLGDNVLLPTLEVDDLIGITHSGAYGLTASPGSFLSFGYPVEVMVDGRRLTLIRQPETT 423

Query: 406 SSLWA 410
             L A
Sbjct: 424 EQLLA 428