Pairwise Alignments

Query, 934 a.a., DNA polymerase I from Vibrio cholerae E7946 ATCC 55056

Subject, 938 a.a., DNA polymerase I (EC 2.7.7.7) from Variovorax sp. SCN45

 Score =  902 bits (2331), Expect = 0.0
 Identities = 480/945 (50%), Positives = 644/945 (68%), Gaps = 32/945 (3%)

Query: 9   LILIDGSSYLYRAFHAYPGTMSNGEIP----TNAIYGVVNMIRSMMRQFASDRMAVIFDA 64
           L+L+DGSSYLYRAFHA P   +    P    T AI G++NM+ ++ R+  +D  A IFDA
Sbjct: 7   LLLVDGSSYLYRAFHAMPDLRAVPGDPKSPATGAIRGMINMMTALRREVRADYAACIFDA 66

Query: 65  KGKTFRDEMYDQYKAHRPPMPDELRCQVEPLHQVIRAMGLPLLAIEGVEADDVIGTLARQ 124
            GKTFRD+ Y +YKA+R PMPD+LR Q++P+H+V++ +G P+L++  VEADDVIGTLA+ 
Sbjct: 67  PGKTFRDDWYPEYKANRSPMPDDLRSQIDPIHEVVKLLGWPVLSVPDVEADDVIGTLAKI 126

Query: 125 ASQAGMPVLISTGDKDMAQLVDDNITLINTMTNVVLDREGVIEKFGIPPELIIDYLALMG 184
           A+  G+ V++S+GDKD++QLVD++IT+I+TM     D  GV  +FG+PP L++DY  L+G
Sbjct: 127 AAAQGVEVIVSSGDKDLSQLVDEHITIIDTMNGKKRDVAGVTAEFGVPPHLMVDYQTLVG 186

Query: 185 DKVDNIPGVPGVGEKTATALLQGIGGLEALYANLDKIAALGFRGSKTMAQKLEENRGNAK 244
           D VDN+PGVP VG KTA   L   G L+AL     ++        +    KL        
Sbjct: 187 DSVDNVPGVPKVGPKTAAKWLLEYGSLDALVERAAEVKGAAGENLRGALDKLP------- 239

Query: 245 LSYQLATIKCDVELE------ESPQTLLKQTPDRDALMSLYGKLAFKSWLT--------- 289
           LS +L TI+ D EL+       S + L    P    L   Y K  FKS +          
Sbjct: 240 LSKRLVTIRTDCELDGHVTGLPSLEGLPVGAPRTAELKPFYEKFGFKSLVKTLEAQEVPP 299

Query: 290 ELLDGGTGIVTADEQTKTSSVTVSTAATHAAAIPESPAAHIDRSQYQTILNEQDFQLWLE 349
           EL++       A +  K         A  +A    +PA+++   +Y T+++ + F  WL 
Sbjct: 300 ELIEENIKKKAASKADKDQGGLFDEPADLSALEAAAPASNL---KYDTVMSWEQFDTWLA 356

Query: 350 KLKQAELFAFDTETDNLDYMVANLVGMSFAVAEGEAAYLPVAHDYLDAPQQLERDWVIAQ 409
           +L+ +EL A DTET +LD MVA +VG+SF+V  GEAAY+P+AH+Y DAP+QL  D V+A+
Sbjct: 357 RLEASELAAIDTETTSLDEMVAQIVGVSFSVTPGEAAYIPLAHNYPDAPEQLPIDEVLAK 416

Query: 410 LKPLLEDESKAKVGQNLKYDASVMARYGVELRGIRHDTMLQSYVYNSVGGKHDMDSLALR 469
           LKP LE+  K K+GQ++KYD  V A +G+E++G  HDTMLQSYV   V   H + SLA R
Sbjct: 417 LKPWLENGDKKKLGQHIKYDRHVFANHGIEVQGYAHDTMLQSYVLE-VHKPHGLSSLAER 475

Query: 470 FLQHSCISFEQVAGKGKNQLTFNQIALEEAAQYAAEDADVTLRLHQRIHPLIEQDAKLEQ 529
            L  S IS+E + GKG +Q+ F+Q+ + +AA+Y+ ED+D TL +H  + P +E+D KL  
Sbjct: 476 HLGRSGISYEDLCGKGAHQIPFSQVDIAKAAEYSCEDSDQTLDVHNTLWPQLERDEKLRF 535

Query: 530 VYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLDQLEQNAYELAGQPFNLSSPK 589
           +Y ++EM     L RIER GV+ID   L++QS E+  R+  LEQ AY++AGQPFNL SPK
Sbjct: 536 IY-QLEMDSSEALYRIERNGVLIDAPTLASQSHELGTRIMALEQEAYDIAGQPFNLGSPK 594

Query: 590 QLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPLPKVLIEYRGLAKLKSTYTDKL 649
           Q+  I F ++ LPV++KTPSG PST+EEVL++LA DYPLP  ++E+RGL+KLK TYTDKL
Sbjct: 595 QIGEIFFTKLGLPVVKKTPSGAPSTDEEVLEKLAEDYPLPAKILEHRGLSKLKGTYTDKL 654

Query: 650 PKMINPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFVAPHGWKIMAV 709
            ++ NP TGRVHT Y QAV  TGRLSS DPNLQNIP+R  EGRR+R+AFVAP G  I + 
Sbjct: 655 GQLANPRTGRVHTHYAQAVAVTGRLSSNDPNLQNIPIRTPEGRRVREAFVAPAGSVIASA 714

Query: 710 DYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNFGL 769
           DYSQIELRIMAH+SGD++LL AF DG D+H ATAAE+ G   D+VSSEQRR AK +NFGL
Sbjct: 715 DYSQIELRIMAHISGDESLLRAFTDGIDVHRATAAEVFGSTPDEVSSEQRRYAKVINFGL 774

Query: 770 IYGMSAFGLAKQLGIPRGEAQEYMDKYFERYPGVMQYMEDTRSRAAQLGYVETIFGRRLH 829
           IYGMS+FGLAK LGI    A  Y+++YF RYPGV  YM++T++ A + GYVET+FGRRL+
Sbjct: 775 IYGMSSFGLAKNLGIETKAAASYIERYFARYPGVKAYMDETKALAKEQGYVETVFGRRLY 834

Query: 830 LPEITSRNAMRRKAAERAAINAPMQGTAADIIKKAMLLVDEWIEREGDGRVKLLMQVHDE 889
           LPEI S N  RR  AERAAINAPMQGTAAD+IK +M+ V   ++ E  G  K++MQVHDE
Sbjct: 835 LPEINSPNGPRRGGAERAAINAPMQGTAADLIKLSMVKVQNVLDEEKRG-TKMIMQVHDE 893

Query: 890 LVFEVKESSLSEIESKVQQLMESAAELAVPLVAEAGHGDNWEQAH 934
           LVFEV E  +  + +++ ++M   A L VPL+AE G G NW++AH
Sbjct: 894 LVFEVPEGEVEWVRTEIPRIMAGVAALKVPLLAEIGVGPNWDKAH 938