Pairwise Alignments

Query, 934 a.a., DNA polymerase I from Vibrio cholerae E7946 ATCC 55056

Subject, 932 a.a., DNA polymerase I (EC 2.7.7.7) from Sphingobium sp. HT1-2

 Score =  672 bits (1733), Expect = 0.0
 Identities = 396/951 (41%), Positives = 564/951 (59%), Gaps = 46/951 (4%)

Query: 7   NPLILIDGSSYLYRAFHAYPGTMSNGEIPTNAIYGVVNMIRSMMRQFAS----DRMAVIF 62
           N L L+DGS Y++RA+H  P   +    P  A+YG   M+  +  +         +AV+ 
Sbjct: 5   NHLYLVDGSGYIFRAYHQLPPLTNQHGQPVGAVYGYTTMLWKLAEELGKAEGPTHLAVVL 64

Query: 63  DAKGKTFRDEMYDQYKAHRPPMPDELRCQVEPLHQVIRAMGLPLLAIEGVEADDVIGTLA 122
           D    TFR++MYDQYKA+RPP P++L  Q   +    RA  LP +   G EADD+I +  
Sbjct: 65  DKGSHTFRNDMYDQYKANRPPAPEDLVPQFPMIRDATRAFSLPCIEEAGFEADDIIASYT 124

Query: 123 RQASQAGMPVLISTGDKDMAQLVDDNITLINTMTNVVLDREGVIEKFGIPPELIIDYLAL 182
           + A +AG  V I + DKD+ QL+   + + +TM N     + V+ KFG+ PE + D LAL
Sbjct: 125 QAAVRAGWHVTIVSSDKDLMQLIQPGVDMYDTMKNERRGADYVMGKFGVLPEQLGDVLAL 184

Query: 183 MGDKVDNIPGVPGVGEKTATALLQGIGGLEALYANLDKIAALGFRGSKTMAQKLEENRGN 242
           MGD VDN+PGVPG+G KTA  L+   G LEA    LD  AA   + SK M + L  +   
Sbjct: 185 MGDSVDNVPGVPGIGPKTAAKLITEYGTLEAA---LD--AAPSMKKSK-MQENLIAHADM 238

Query: 243 AKLSYQLATIKCDVELEESPQTLLKQTPDRDALMSLYGKLAFKSWLTELLDGGTGIVTAD 302
           A+LS +L  +   ++L E    L  +   ++ L +      FK+ L  L           
Sbjct: 239 ARLSRRLVALHDSMDLPEPLDDLTLKGIPKEPLQAFLSHHGFKTLLNRL----------G 288

Query: 303 EQTKTSSVTVSTAATHAAAIPESPAA------HIDRSQYQTILNEQDFQLWLEKLKQAEL 356
               T +V  + AAT+ A  P  P         ID + Y+T+   +  Q+W+++ +   +
Sbjct: 289 APAATVAVASAAAATNGADAPPPPPVIEVEHPPIDCALYETVTTVEALQVWIDEARALGV 348

Query: 357 FAFDTETDNLDYMVANLVGMSFAVAEGEAAYLPVAHDYLD-----APQQLERDWVIAQLK 411
            A DTETD LD M + LVG+S +   G A Y+P+AH   D      PQQ+  D  I  LK
Sbjct: 349 VAVDTETDALDSMESGLVGISLSTGPGRACYIPLAHRSADDMFGEVPQQIALDDAIRLLK 408

Query: 412 PLLEDESKAKVGQNLKYDASVMARYGVELRGIRHDTMLQSYVYN---SVGGKHDMDSLAL 468
           PLL D++  KVG N+KYD +V+AR G+E+  I  D+M+ S+  +   S+GG H MD  A 
Sbjct: 409 PLLADDAVLKVGHNIKYDLNVLARVGLEVTPI-DDSMVMSFDLDAGKSLGG-HGMDEAAS 466

Query: 469 RFLQHSCISFEQVAGKGKNQLTFNQIALEEAAQYAAEDADVTLRLHQRIHPLIEQDAKLE 528
             L H+CISF++V G GK  ++F  + L++A  YAAEDA+VT RL  ++   +  +    
Sbjct: 467 VHLNHTCISFKEVTGTGKKAISFAHVPLDKATAYAAEDAEVTWRLWHKLSGRLPAEGAT- 525

Query: 529 QVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLDQLEQNAYELAGQPFNLSSP 588
           +VY+ ++ PL+PV++ +ER G+ +D   LS  S   +  +  LE   +ELAG PF + SP
Sbjct: 526 RVYQLVDRPLIPVVAGMERQGIKVDREALSRLSGSFSQSIAGLEAEIHELAGHPFTIGSP 585

Query: 589 KQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALD-YPLPKVLIEYRGLAKLKSTYTD 647
           +QL  +LF++M L   +K  SGT ST+  VL++L  +   +  +++E+R L+KLKSTYTD
Sbjct: 586 QQLGVVLFDEMGLKGGKKGKSGTYSTDVTVLEKLKAEGSAICGLVLEWRQLSKLKSTYTD 645

Query: 648 KLPKMINPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFVAPHGWKIM 707
            L + IN  TGRVHTSY      TGRLSSTDPNLQNIP+R E GR+IR AFVA  G  I+
Sbjct: 646 ALQQQINRDTGRVHTSYSLTGAQTGRLSSTDPNLQNIPIRTEIGRQIRHAFVAEPGNVIL 705

Query: 708 AVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNF 767
           A DYSQIELR+ AH++   AL DAF  G+DIH  TA E+ G    +V+ + R RAK +NF
Sbjct: 706 AADYSQIELRLAAHMADVPALKDAFEQGEDIHNRTAMELFG----EVNRDTRGRAKTINF 761

Query: 768 GLIYGMSAFGLAKQLGIPRGEAQEYMDKYFERYPGVMQYMEDTRSRAAQLGYVETIFGRR 827
            ++YG+S +GLA +L I   EAQ+ + +Y+ER+PG+  Y+ +T  +A   G+ ET+FGR+
Sbjct: 762 AILYGISRWGLAGRLEISADEAQDMISRYYERFPGISVYINETLEKARANGFTETLFGRK 821

Query: 828 LHLPEITSRNAMRRKAAERAAINAPMQGTAADIIKKAMLLVDEWIEREGDGRVKLLMQVH 887
              P I +     R+ AERAAINAP+QGT+ADIIK+AM  +   +E  G  RV++L+QVH
Sbjct: 822 TWFPRIKAPVQHERQGAERAAINAPIQGTSADIIKRAMARMGPALEAAGLPRVRMLLQVH 881

Query: 888 DELVFEVKESSLSEIESKVQQLMESAAE----LAVPLVAEAGHGDNWEQAH 934
           DELVFE+ E  +      ++Q+MESAAE    L+VPL  E G G +W  AH
Sbjct: 882 DELVFELPEGDVEAASKVIRQVMESAAEPMVSLSVPLGVEIGTGPSWGAAH 932