Pairwise Alignments

Query, 934 a.a., DNA polymerase I from Vibrio cholerae E7946 ATCC 55056

Subject, 970 a.a., DNA polymerase I from Brevundimonas sp. GW460-12-10-14-LB2

 Score =  709 bits (1830), Expect = 0.0
 Identities = 400/955 (41%), Positives = 569/955 (59%), Gaps = 38/955 (3%)

Query: 9   LILIDGSSYLYRAFHAYPG-TMSNGEIPTNAIYGVVNMIRSMMRQFAS----DRMAVIFD 63
           L +ID S+Y++RA+HA P  T  +  +P  A+ G  NM+  +++          +  IFD
Sbjct: 25  LWMIDASAYIFRAYHALPPLTRKSDGLPVGAVQGYCNMLWKLLKDMKGADGPTHLVAIFD 84

Query: 64  AKGKTFRDEMYDQYKAHRPPMPDELRCQVEPLHQVIRAMGLPLLAIEGVEADDVIGTLAR 123
              KTFR+ +YDQYKAHRPP P++L  Q   + +   A G+  + + G EADD+I T A 
Sbjct: 85  NSEKTFRNTLYDQYKAHRPPPPEDLVPQFPLVREATAAFGVHCVELPGYEADDLIATYAC 144

Query: 124 QASQAGMPVLISTGDKDMAQLVDDNITLINTMTNVVLDREGVIEKFGIPPELIIDYLALM 183
           +A  AG   +I + DKD+ QL+   + + + M +  L    V EKFG+ PE ++D  AL+
Sbjct: 145 KARDAGGEAVIVSSDKDLMQLIGGGVVMWDPMKDRRLAEPEVFEKFGVGPEKMVDLQALI 204

Query: 184 GDKVDNIPGVPGVGEKTATALLQGIGGLEALYANLDKIAALGFRGSKTMAQKLEENRGNA 243
           GD VDN+PG PG+G KTA  LL   G L+ L AN  +I     R      Q L +     
Sbjct: 205 GDSVDNVPGAPGIGPKTAAQLLDEYGDLDTLLANAGEIKQPKRR------QTLIDFADQI 258

Query: 244 KLSYQLATIKCDVELEESPQTLLKQTPDRDALMSLYGKLAFKSWLTELLDG--GTGIVTA 301
           +LS +L  + CD    E+      + PD   L +    + F+S    + DG  G   V+A
Sbjct: 259 RLSRELVRLTCDAPAPEAIDDFAVRDPDPAILSAFLETMEFRSLQRRVGDGKAGPSDVSA 318

Query: 302 DEQTKTSSVTVSTAATHAAAIPESPAA--HIDRSQYQTILNEQDFQLWLEKLKQAELFAF 359
               +  ++    A      + E PA     D + Y+ +  E+    W+ +  +  +  F
Sbjct: 319 FAPKRAPNLNAPVATPRYGQVVEGPAEVQTFDHAAYECVQTEEALDRWIARATEVGVVGF 378

Query: 360 DTETDNLDYMVANLVGMSFAVAEGEAAYLPVAHDYL-------------DAPQ---QLER 403
           DTETD L    A L G+S AV   EA Y+P+ H++              + P+   QL++
Sbjct: 379 DTETDTLSATHAGLCGVSLAVGPNEACYIPLTHEHEPQAGEGGLFGEAGETPEPIHQLDK 438

Query: 404 DWVIAQLKPLLEDESKAKVGQNLKYDASVMARYGVELRGIRHDTMLQSYVYNSVGGKHDM 463
              +A+LK LLED S  KV QN KYD +VMAR G+ +     DTML SYV       H M
Sbjct: 439 PTTLAKLKTLLEDPSVLKVLQNAKYDIAVMARRGIRVAPY-DDTMLMSYVLEGGLHGHGM 497

Query: 464 DSLALRFLQHSCISFEQVAGKGKNQLTFNQIALEEAAQYAAEDADVTLRLHQRIHPLIEQ 523
           D LA   L H  I F+ VAG GK+Q +F  +AL+ A++YAAEDADVTLRL + + P + +
Sbjct: 498 DELARLHLGHEPIPFKSVAGTGKSQKSFKHVALKPASEYAAEDADVTLRLWRILKPRLAR 557

Query: 524 DAKLEQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLDQLEQNAYELAGQPF 583
           +  L  VY  +E  +  VL+ +E  GV ID   L   S E  LR+ +LE  A+E+AG+PF
Sbjct: 558 EG-LSTVYETLERSMPTVLADMELNGVRIDPDRLKRLSSEFGLRMAELEAQAHEIAGRPF 616

Query: 584 NLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPLPKVLIEYRGLAKLKS 643
           N+ SP+Q+  ILF ++ LP  +KT SG   T+  VL+ELAL + LP+ ++++R L+KLK 
Sbjct: 617 NIGSPRQIGEILFGELNLPGGKKTASGQWGTDASVLEELALSHDLPRAILDWRQLSKLKG 676

Query: 644 TYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFVAPHG 703
           TYTD L    +P T RVHTSY  A   TGRL+S+DPNLQNIP+R E GR IRQAF+A  G
Sbjct: 677 TYTDALTAAADPKTDRVHTSYQLAAATTGRLASSDPNLQNIPIRTETGREIRQAFIAAPG 736

Query: 704 WKIMAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAK 763
             +++ DYSQIELR++AH+     L  AF+ G DIHAATA+E+ GVP++ + SE RRRAK
Sbjct: 737 NVLISADYSQIELRLLAHIGDIPELKRAFKAGLDIHAATASEMFGVPVEGMPSETRRRAK 796

Query: 764 AVNFGLIYGMSAFGLAKQLGIPRGEAQEYMDKYFERYPGVMQYMEDTRSRAAQLGYVETI 823
           A+NFG++YG+SAFGLA QLGI +GEA  Y+  YFER+PG+  YM+ T++   Q G+V T+
Sbjct: 797 AINFGIVYGISAFGLANQLGIDQGEAGAYIKTYFERFPGIRAYMDKTKAEVRQTGFVSTV 856

Query: 824 FGRRLHLPEITSRNAMRRKAAERAAINAPMQGTAADIIKKAMLLVDEWIEREGDGRVKLL 883
           FGRR+H+P I S++   R+  ERAAINAP+QG AADII++AM+ +   + + G    ++L
Sbjct: 857 FGRRIHIPAIHSKSGAERQFGERAAINAPIQGAAADIIRRAMIRMPAALTKAGLA-TRML 915

Query: 884 MQVHDELVFEVKESSLSEIESKVQQLMESAAE----LAVPLVAEAGHGDNWEQAH 934
           +QVHDELVFE  E+      + ++++ME+A++    L VPLV +A    NW+ AH
Sbjct: 916 LQVHDELVFEAPEAEADRAIAVIKRVMENASDPAVALTVPLVVDARAASNWDAAH 970