Pairwise Alignments

Query, 659 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 849 a.a., hypothetical protein from Azospirillum sp. SherDot2

 Score =  288 bits (738), Expect = 5e-82
 Identities = 157/297 (52%), Positives = 217/297 (73%)

Query: 302 VVNEVKRVMTALSSGDLSAQLTHPFEGEFAELGEVISQFIVTLRQIITDINSVAATIKLA 361
           V  ++  V+ +LS GDL++++   +EG F  L +  +  +  L +I+  I+  A +I +A
Sbjct: 548 VTEDLATVLESLSRGDLTSRIDKQYEGVFQRLKDDFNGTVGRLSEIVQRIDHAAGSIAVA 607

Query: 362 ATEISNGNTDLSSRTEQQASNLEQTASSMEELNSTVRQNSDNAMQANILAGKATEIAASG 421
           + E++ G+ DLS RTEQQAS+LE+TA+SME+L +TVR N+DNA Q N  A +A   A+ G
Sbjct: 608 SREVAEGSMDLSERTEQQASSLEETAASMEQLAATVRSNADNAQQVNGYATEARAAASRG 667

Query: 422 GELIEQVVVTMASINESAQKIADIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFSVVA 481
           G++    V  M  I +S+QKI+DIIGVID IAFQTN+LALNAAVEAARAG+ GRGF+VVA
Sbjct: 668 GQVATSAVEAMRRIEQSSQKISDIIGVIDEIAFQTNLLALNAAVEAARAGDAGRGFAVVA 727

Query: 482 SEVRSLAQRSANAAKDIKALISDSVSKISNGNELVDRSGSTMKDIVVSIKRVHDLMADIA 541
            EVR LAQRSA A+K+IKALI DS  ++  G +LV  +GS++ +IV  I RV DL+++IA
Sbjct: 728 QEVRQLAQRSAQASKEIKALILDSGGQVREGVDLVRSAGSSLTEIVSGIGRVADLVSEIA 787

Query: 542 SASAEQATGINEVNQAVNQMDEMTQQNAALVEEAAAASESLLAQAEQLYDHVAMFRL 598
            A+AEQA+G++EVN A++QMDEMTQ+NAALVEE+ AA+ SL  QA+QL   +  F L
Sbjct: 788 RATAEQASGLDEVNIAISQMDEMTQKNAALVEESTAAARSLEDQADQLRQQMTFFTL 844



 Score = 29.6 bits (65), Expect = 6e-04
 Identities = 41/204 (20%), Positives = 83/204 (40%), Gaps = 18/204 (8%)

Query: 327 EGEFAELGEVISQFIVTLRQ------IITDINSVAATIKLAATEISNGNTDLSSRTEQQA 380
           E E   +G+ I++    L+        + D+++ AA  + A  EI   N D   RT+   
Sbjct: 213 EAEGKAMGDGIARLSTLLQNNAVLSVALRDVDARAAEYRSAFREIVAANDDAKRRTDDLV 272

Query: 381 SNLEQTASSMEELNSTVRQNSDNAMQANILAGKATEIAASGGELIEQVVVTMASINESAQ 440
           +       +++ + +++   S  A++ +  +  A  I  + G  +  +V+ + + N  A 
Sbjct: 273 TAASAVNRAIDGIVASIAAGS-RAIEQHAGSEAAFTIRLTVGLGLLSLVIGIVAANRIA- 330

Query: 441 KIADIIGVIDGI-AFQTNILALNAAVEAARAGEQ------GRGFSVVASE-VRSLAQRSA 492
             A I+G + GI    T +     +V     G+Q       R       E V +L  R A
Sbjct: 331 --ASIVGPVTGIRRVMTELTEGKLSVSVPHTGQQDELGDMARAVDAFKDEAVEALRSRIA 388

Query: 493 NAAKDIKALISDSVSKISNGNELV 516
                   +++D+  +I   N+ +
Sbjct: 389 LERVSANIMMADADGRILYANDSI 412