Pairwise Alignments

Query, 659 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 594 a.a., methyl-accepting chemotaxis protein from Agrobacterium fabrum C58

 Score =  400 bits (1027), Expect = e-115
 Identities = 233/605 (38%), Positives = 357/605 (59%), Gaps = 34/605 (5%)

Query: 67  AFVQVIREHLALLECEPNGTICYASDAFAHLCRVSAEAMVGADFANLWRTHQQPSVQRLL 126
           A +  + +  A++E + +G I  A+++F   CR      +G + A +   H    V+  +
Sbjct: 12  AVLAALSKSQAIIEFDLSGKILTANESF---CRA-----IGYELAEIVGRHHSLFVEPSV 63

Query: 127 QDAKKGHPVSAEL-----------QLSRSQEAIWIKADLYPIKAINGQLQNVVVLLQDIT 175
             +       ++L           ++ +    +WI+A   P+    G+   VV +  DIT
Sbjct: 64  VSSPDYKAFWSKLASGQFDQRQYKRIGKGGREVWIEASYNPVFR-RGRPVKVVKIATDIT 122

Query: 176 AAKLEKIDRSGQMNAVNLTQAVIEFTLDGTILTANQNFLQTVGYQLDEIQGRHHSMFVDE 235
             KL   + +G+++A++  QA+IEF+ +G +LTAN NFL  +GY L E+QGRHHSMF D 
Sbjct: 123 ERKLRAAEDAGKIDALSRAQAIIEFSPEGEVLTANDNFLAALGYSLSEVQGRHHSMFCDP 182

Query: 236 QYKQSQEYQHFWQRLRSGEFFVDEYKRFGKGGKEIWIQASYNPIMDSEGKPYKVVKYATN 295
            Y QS EY+ FWQRL  G+   DE+ R GKGG++++IQASYNPI D  GK +KVVK+AT+
Sbjct: 183 AYTQSSEYKQFWQRLAGGDLVADEFMRLGKGGRKVFIQASYNPIFDMNGKVFKVVKFATD 242

Query: 296 VTQRKMVVNEVKRVMTALSSGDLSAQLTHPFEGEFAELGEVISQFIVTLRQIITDINSVA 355
           VT R   V  + + +  L+ GDL+  +  PF      L    +     L++ +T ++  A
Sbjct: 243 VTGRVENVETLAQCLNDLAEGDLAQSIDKPFIPSLERLRTDFNAASEKLKRAMTLVSENA 302

Query: 356 ATIKLAATEISNGNTDLSSRTEQQASNLEQTASSMEELNSTVRQNSDNAMQANILAGKAT 415
             I   + EI +   DL+ RTEQQA+++E+TA+++EE+ + V  +S  A +A  +  +A 
Sbjct: 303 GAISSGSNEIRSAADDLAKRTEQQAASIEETAAALEEITTAVNDSSRRADEAGKIVARAR 362

Query: 416 EIAASGGELIEQVVVTMASINESAQKIADIIGVIDGIAFQTNILALNAAVEAARAGEQGR 475
           + A   G+++   +  M  I +S+++I++IIGVID IAFQTN+LALNA VEAARAGE G+
Sbjct: 363 DHAEHSGQVVRDAISAMDQIEKSSREISNIIGVIDEIAFQTNLLALNAGVEAARAGEAGK 422

Query: 476 GFSVVASEVRSLAQRSANAAKDIKALISDSVSKISNGNELVDRSGSTMKDIVVSIKRVHD 535
           GF+VVA EVR LAQRSA AAK+IK+LI+ S +++ NG  LV R+GS +++I   ++ ++ 
Sbjct: 423 GFAVVAQEVRELAQRSATAAKEIKSLINASGAQVENGVGLVTRAGSALQEIAEQVRDINT 482

Query: 536 LMADIASASAEQATGINEVNQAVNQMDEMTQQNAALVEEAAAASESLLAQAEQLYDHVAM 595
            +  I  A+ EQ+T + E+NQAVN +D+ TQQNAA+VEE  AAS SL  +A  L++ +  
Sbjct: 483 NVVAIVEAAREQSTALAEINQAVNTVDQGTQQNAAMVEEQTAASHSLAREAAALFELLGQ 542

Query: 596 FRLPDQDTSAPSLLKAVNKRPQSAPVT-RHPASHIAKTPAKITAKASSRAQPVMQVAHDE 654
           FR  D   S  S      +  Q+APV+ RH  S             ++R    + V H E
Sbjct: 543 FRFEDAPRSTSSSRNRFEQ--QAAPVSPRHSPSR----------PLAARGSAAVAVKH-E 589

Query: 655 EWESF 659
           EW+ F
Sbjct: 590 EWQDF 594