Pairwise Alignments
Query, 659 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056
Subject, 590 a.a., methyl-accepting chemotaxis protein from Agrobacterium fabrum C58
Score = 397 bits (1020), Expect = e-115
Identities = 232/580 (40%), Positives = 341/580 (58%), Gaps = 29/580 (5%)
Query: 65 NQAFVQVIREHLALLECEPNGTICYASDAFAHLCRVSAEAMVGADFANLWRTHQQ----- 119
N+ + I A++E + G I A+ F +G D A + H +
Sbjct: 10 NRNMLDAISRSQAVIEFDLKGNILTANRNFC--------MALGYDLAEIVGKHHRIFCDR 61
Query: 120 -----PSVQRLLQDAKKGHPVSAELQLSRSQ-EAIWIKADLYPIKAINGQLQNVVVLLQD 173
+ Q + +G + E + R A+WI+A P+ +G+ VV + D
Sbjct: 62 EIAASHAYQEFWESLARGEFQAKEYRRIRKDGSAVWIEASYNPVFR-SGKPYKVVKIATD 120
Query: 174 ITAAKLEKIDRSGQMNAVNLTQAVIEFTLDGTILTANQNFLQTVGYQLDEIQGRHHSMFV 233
ITA +++ ++ +G++ A++ +QA IEF DGTI+TAN NF TV Y L EI+G+HH MF
Sbjct: 121 ITAKRIKAVEDAGKLEALSRSQATIEFFPDGTIITANPNFCATVNYDLKEIEGKHHRMFC 180
Query: 234 DEQYKQSQEYQHFWQRLRSGEFFVDEYKRFGKGGKEIWIQASYNPIMDSEGKPYKVVKYA 293
D Y S Y +FWQRL SGEF DE+ R+GK GKEIWIQA+YNP++D GK KVVK+A
Sbjct: 181 DPAYTASAAYANFWQRLASGEFISDEFVRYGKNGKEIWIQAAYNPVLDEAGKVVKVVKFA 240
Query: 294 TNVTQRKMVVNEVKRVMTALSSGDLSAQLTHPFEGEFAELGEVISQFIVTLRQIITDINS 353
T+VT R + + + AL++GDL +L F +L ++ + L+ + I+
Sbjct: 241 TDVTPRMSAITVLADALQALAAGDLVQRLDTSFVPSMEKLRADFNEVVGKLQATMQTISH 300
Query: 354 VAATIKLAATEISNGNTDLSSRTEQQASNLEQTASSMEELNSTVRQNSDNAMQANILAGK 413
A+TI + EI LS RTEQQA++LE+TA+++EE+ +TV S A +A L +
Sbjct: 301 NASTIASGSGEIRIAADQLSQRTEQQAASLEETAAALEEITTTVTDASQRAAEAGKLVLR 360
Query: 414 ATEIAASGGELIEQVVVTMASINESAQKIADIIGVIDGIAFQTNILALNAAVEAARAGEQ 473
E A G++++Q + M +I+ S+ +I +IIGVID IAFQTN+LALNA VEAARAGE
Sbjct: 361 TREHAEHSGDVVQQAISAMDAISRSSGEITNIIGVIDDIAFQTNLLALNAGVEAARAGEA 420
Query: 474 GRGFSVVASEVRSLAQRSANAAKDIKALISDSVSKISNGNELVDRSGSTMKDIVVSIKRV 533
G+GF+VVA EVR LAQRSA AAK+IK+LI+ S +++NG +LV R+G ++DI + +
Sbjct: 421 GKGFAVVAQEVRELAQRSAVAAKEIKSLINTSREQVANGVDLVGRTGGALRDIQSQMGEI 480
Query: 534 HDLMADIASASAEQATGINEVNQAVNQMDEMTQQNAALVEEAAAASESLLAQAEQLYDHV 593
++ I AS EQA G+ E+NQAVN MD+ TQ+NAA+VEE AAS L ++A+ LY +
Sbjct: 481 DINVSAIVEASREQANGLKEINQAVNVMDQATQKNAAMVEETTAASHGLASEADNLYVLL 540
Query: 594 AMFRLPDQ---------DTSAPSLLKAVNKRPQSAPVTRH 624
F++ D A S+ + +P+ A H
Sbjct: 541 RQFKISGDGQISSAQPIDKKAASISRLPTPQPRYATARAH 580
Score = 139 bits (351), Expect = 3e-37
Identities = 117/405 (28%), Positives = 184/405 (45%), Gaps = 78/405 (19%)
Query: 183 DRSGQMNAVNLTQAVIEFTLDGTILTANQNFLQTVGYQLDEIQGRHHSMFVDEQYKQSQE 242
D ++A++ +QAVIEF L G ILTAN+NF +GY L EI G+HH +F D + S
Sbjct: 9 DNRNMLDAISRSQAVIEFDLKGNILTANRNFCMALGYDLAEIVGKHHRIFCDREIAASHA 68
Query: 243 YQHFWQRLRSGEFFVDEYKRFGKGGKEIWIQASYNPIMDSEGKPYKVVKYATNVTQRKMV 302
YQ FW+ L GEF EY+R K G +WI+ASYNP+ S GKPYKVVK AT++T
Sbjct: 69 YQEFWESLARGEFQAKEYRRIRKDGSAVWIEASYNPVFRS-GKPYKVVKIATDIT----- 122
Query: 303 VNEVKRVMTALSSGDLSAQLTHPFEGEFAELGEVISQFIVTLRQIITDINSVAATIKLAA 362
KR+ +G L A EF G IIT + AT+
Sbjct: 123 ---AKRIKAVEDAGKLEALSRSQATIEFFPDG-----------TIITANPNFCATVNYDL 168
Query: 363 TEISNGN----TDLSSRTEQQASNLEQTASSMEELNSTVRQNSDNAMQANILAGKATEIA 418
EI + D + +N Q +S E ++ + N GK I
Sbjct: 169 KEIEGKHHRMFCDPAYTASAAYANFWQRLASGEFISDEFVRYGKN--------GKEIWIQ 220
Query: 419 ASGGELIEQVVVTMASINESAQKIADIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFS 478
A+ ++++ A K+ + + F T++ +A+ +
Sbjct: 221 AAYNPVLDE-----------AGKVVKV------VKFATDVTPRMSAI------------T 251
Query: 479 VVASEVRSLAQRSANAAKDIKALISDSVSKI-SNGNELVDRSGSTMKDIVVSIKRVHDLM 537
V+A +++LA + + + + S+ K+ ++ NE+V + +TM+ I + +
Sbjct: 252 VLADALQALA--AGDLVQRLDTSFVPSMEKLRADFNEVVGKLQATMQTISHNASTI---- 305
Query: 538 ADIASASAEQATGINEVNQAVNQMDEMTQQNAALVEEAAAASESL 582
A+G E+ A +Q+ + T+Q AA +EE AAA E +
Sbjct: 306 ----------ASGSGEIRIAADQLSQRTEQQAASLEETAAALEEI 340