Pairwise Alignments

Query, 454 a.a., MATE family efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 451 a.a., Na+ driven multidrug efflux pump from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score = 70.1 bits (170), Expect = 1e-16
 Identities = 110/441 (24%), Positives = 180/441 (40%), Gaps = 65/441 (14%)

Query: 18  RQVLAIALPMVLSNITVPLLGLVDAAVIGHLEHAWYLGGVALGSTMISVTFWLLGF---L 74
           R  L   +PMVLSNI   L G ++   IG +     L  V   S M  + F+ +     +
Sbjct: 11  RVYLVFLVPMVLSNILQGLSGTLNGIFIGQMLGTHALAAV---SGMFPIVFFFISLVIGI 67

Query: 75  RMSTTGLTAQAHGAQNSQQLARV----LLQGSVIALGLAALFLLFHRPVAELIFHFSDAS 130
               + L  QA GA+   ++  +    L+ G++I L  A L ++F RP  + +    D  
Sbjct: 68  GAGASVLIGQAWGAREPHKVKAIAGTALVLGALIGLVAAVLGVVFARPALQALGTPVDVL 127

Query: 131 SEVKTYAEAYFYIRAWSAPAALLNFVLLGWLL-GTQNARAPMWMVIITNLTNIVLDLLLV 189
            +   YA     I        LL F+L   LL G  +  +P+  ++++    ++L   L+
Sbjct: 128 DDAVAYARVMLLIM-----PLLLVFILFTQLLRGVSDTVSPLIALLLSTALGLLLTPALI 182

Query: 190 LG-LGLK---VEGAAIASVIADYAGLLFGLLCVGRYWRQHQLPAPFSFIPSLTKELSRLV 245
            G LGL    ++ AA A +++  A L F    +GR  + H L        ++ +EL   +
Sbjct: 183 QGWLGLPRLGIQSAAYAGLVSYAAALGFLAWRLGR--KHHVL--------AVDRELIGAL 232

Query: 246 ALNRDIFLRSLCL-------QAVFSFMTFQGAAL----GDDIVAANAVLMSFLMMISYGM 294
            L+RDI  + + +         V S       AL    G    AA   +   +  + +  
Sbjct: 233 RLDRDILAKVMRIGIPTGLQMVVISVSELVILALVNGHGSQATAAYGAVTQVVNYVQFPA 292

Query: 295 DGFAYAMEAMVGKAIGAKDDRQLRTAMISSTFWATMICLLLSLIFLGF--GSDLIQMITN 352
              A     +  ++IGA    +L  A++ +  W   + L  +L+ LG+     L+ +   
Sbjct: 293 LSIAITASILAAQSIGAGRVDRL-GAILRTGLWLNAV-LTGALVLLGYALSHKLMGLFLT 350

Query: 353 IPSVQATAEHYLPWLVAMPLIAVWCFLLDGVFIGATKGKEMRNS------MAVSAVAFFA 406
            P V+A AEH L        I +W  L+ G    A  G  MR S      MA+S     A
Sbjct: 351 QPEVRAQAEHLLH-------IMLWSILVFG--FQAVVGGLMRASGVVMVPMAISVFCILA 401

Query: 407 I-----YGFMTHYGNHALWLA 422
           I     Y      G   +W+A
Sbjct: 402 IQLPAAYVLDAKMGLPGVWVA 422